Why duplicate files when importing

Why am I getting duplicate files when importing into iTunes? I am dragging and dropping them into iTunes. When I ask to find file in finder, I am sent to the iTunes music folder and there are 2 files for each song added. I don't have that kind of space!
I spent several hours trying to clean this up and deleted duplicates out of iTunes library, then out of the music folder. I tried to test which file of the song I was deleating (orig file, not file1) and now .... iTunes can't find about 3,500 tracks that will need to be reassociated. What is the easiest way to do that?
I'm not sure if this is another subject or not, but when I go to delete a track it does not show up in trash first. I only get one window asking me if I want to delete this - click yes and it's forever gone. Do not pass trash. YIKES. Is there a way to get it into trash -> then empty trash like everything else?
Thx.
iTunes 11.0.1 on Mac OSX 10.6.8

Maybe I may have figured out part of my question ... these albums have a .mu3 file. Would that be causing the duplicates?

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