10.5.7 upgrade, Python & matplotlib

I'm using python (macpython 2.5) & matplotlib for huge data analyses and visualisation (with imagemagick and mplayer, I should add). While matplotlib (0.98.5.2) usually took enormous amounts of memory, (during a period of time up to 1.5 Gigs working memory) which isn't good, after updating to 10.5.7 (from 10.5.6), things got worse. After a couple of minutes in which a couple of hundred pngs, (800x600, just a scientific graph) were plotted, it would go RuntimeError on me. And not just that. Python would quit with an error code 12. Something to do with memory allocation, even if it's the first thing after booting up. Malloc and stuff.
I'm pretty sure it's a matplotlib-thing as, other datahandling code without matplotlib kept working.
Good news though: with the Enthought edition these troubles disappear. Completely.

Nevermind that, I still get this error:
Python(9737) malloc: * mmap(size=65536) failed (error code=12)
* error: can't allocate region
* set a breakpoint in mallocerrorbreak to debug
Python(9737) malloc: * mmap(size=65536) failed (error code=12)
* error: can't allocate region
* set a breakpoint in mallocerrorbreak to debug
Python(9737) malloc: * mmap(size=65536) failed (error code=12)
* error: can't allocate region
* set a breakpoint in mallocerrorbreak to debug
libpng error: zlib failed to initialize compressor
which is an odd error since it has made 424 pngfiles without error. and memory wasn't full according to iStat.
And python doesn't just quit after this error. It keeps running, filling up working space memory. Grr.

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    (11:25:37) docklet: GTK+ created
    (11:25:37) gtkmedia: Registering media element types
    (11:25:37) util: Reading file blist.xml from directory /home/damien/.purple
    (11:25:37) pounce: Error reading pounces: L'ouverture du fichier « /home/damien/.purple/pounces.xml » a échoué : Aucun fichier ou dossier de ce type
    (11:25:37) Session Management: ICE initialized.
    (11:25:37) Session Management: Connecting with no previous ID
    (11:25:37) Session Management: Handling new ICE connection...
    (11:25:37) done.
    (11:25:37) Session Management: Connected to manager (gnome-session) with client ID 10319a710810406a35136826433783426200000009780038
    (11:25:37) Session Management: Using pidgin as command
    (11:25:37) account: Connecting to account [email protected]/.
    (11:25:37) connection: Connecting. gc = 0x252e7a0
    (11:25:37) util: Writing file /home/damien/.purple/icons/a20e8556db766e268400d92c40f6ffb645a7aa90.png
    (11:25:38) dnssrv: querying SRV record for gmail.com: _xmpp-client._tcp.gmail.com
    (11:25:38) Session Management: Received first save_yourself
    (11:25:38) Session Management: Received save_complete
    (11:25:38) docklet: embedded
    (11:25:38) dnssrv: found 5 SRV entries
    (11:25:38) dnsquery: Performing DNS lookup for xmpp.l.google.com
    (11:25:38) dns: Created new DNS child 2892, there are now 1 children.
    (11:25:38) dns: Successfully sent DNS request to child 2892
    (11:25:38) dns: Got response for 'xmpp.l.google.com'
    (11:25:38) dnsquery: IP resolved for xmpp.l.google.com
    (11:25:38) proxy: Attempting connection to 2a00:1450:400c:c00::7d
    (11:25:38) proxy: Connecting to xmpp.l.google.com:5222 with no proxy
    (11:25:38) proxy: Connection in progress
    (11:25:43) util: Writing file prefs.xml to directory /home/damien/.purple
    (11:25:43) util: Writing file /home/damien/.purple/prefs.xml
    (11:25:43) util: Writing file accounts.xml to directory /home/damien/.purple
    (11:25:43) util: Writing file /home/damien/.purple/accounts.xml
    dns[2892]: nobody needs me... =(
    And this is the packages I updated before the problem appears (I tried to downgrade the gnome control center, but it didn't change anything).
    [2013-05-09 19:50] [PACMAN] Running 'pacman -Syu'
    [2013-05-09 19:50] [PACMAN] synchronizing package lists
    [2013-05-09 19:51] [PACMAN] starting full system upgrade
    [2013-05-09 19:52] [PACMAN] Running 'pacman -Su pacman'
    [2013-05-09 19:52] [PACMAN] starting full system upgrade
    [2013-05-09 19:54] [PACMAN] Running 'pacman -S pacman'
    [2013-05-09 19:54] [PACMAN] upgraded pacman (4.1.0-2 -> 4.1.1-1)
    [2013-05-09 19:54] [PACMAN] Running 'pacman -Syu'
    [2013-05-09 19:54] [PACMAN] synchronizing package lists
    [2013-05-09 19:55] [PACMAN] starting full system upgrade
    [2013-05-09 20:02] [PACMAN] upgraded alsa-lib (1.0.27-1 -> 1.0.27-2)
    [2013-05-09 20:02] [PACMAN] upgraded avahi (0.6.31-6 -> 0.6.31-7)
    [2013-05-09 20:02] [PACMAN] upgraded libpng (1.5.15-1 -> 1.6.2-3)
    [2013-05-09 20:02] [PACMAN] upgraded cairo (1.12.14-3 -> 1.12.14-4)
    [2013-05-09 20:02] [PACMAN] upgraded cairomm (1.10.0-2 -> 1.10.0-3)
    [2013-05-09 20:02] [PACMAN] upgraded celestia (1.6.1-4 -> 1.6.1-5)
    [2013-05-09 20:02] [PACMAN] upgraded openjpeg (1.5.0-1 -> 1.5.1-1)
    [2013-05-09 20:02] [PACMAN] upgraded poppler (0.22.3-2 -> 0.22.3-3)
    [2013-05-09 20:02] [PACMAN] upgraded cups-filters (1.0.34-2 -> 1.0.34-3)
    [2013-05-09 20:02] [PACMAN] upgraded dirmngr (1.1.0-5 -> 1.1.1-1)
    [2013-05-09 20:02] [PACMAN] upgraded eina (1.7.5-1 -> 1.7.6-1)
    [2013-05-09 20:02] [PACMAN] upgraded eet (1.7.5-1 -> 1.7.6-1)
    [2013-05-09 20:02] [ALPM-SCRIPTLET] g_module_open() failed for /usr/lib/gdk-pixbuf-2.0/2.10.0/loaders/libpixbufloader-svg.so: libpng15.so.15: cannot open shared object file: No such file or directory
    [2013-05-09 20:02] [PACMAN] upgraded gdk-pixbuf2 (2.28.1-1 -> 2.28.1-2)
    [2013-05-09 20:02] [PACMAN] upgraded librsvg (2.37.0-1 -> 2.37.0-2)
    [2013-05-09 20:02] [PACMAN] upgraded evas_generic_loaders (1.7.5-4 -> 1.7.6-1)
    [2013-05-09 20:02] [PACMAN] upgraded evas (1.7.5-1 -> 1.7.6-1)
    [2013-05-09 20:02] [PACMAN] upgraded ecore (1.7.5-1 -> 1.7.6-1)
    [2013-05-09 20:02] [PACMAN] upgraded e_dbus (1.7.5-1 -> 1.7.6-1)
    [2013-05-09 20:02] [PACMAN] upgraded eio (1.7.5-1 -> 1.7.6.1-1)
    [2013-05-09 20:02] [PACMAN] upgraded embryo (1.7.5-1 -> 1.7.6-1)
    [2013-05-09 20:02] [PACMAN] upgraded edje (1.7.5-1 -> 1.7.6-1)
    [2013-05-09 20:02] [PACMAN] upgraded systemd (202-2 -> 203-2)
    [2013-05-09 20:02] [PACMAN] upgraded eeze (1.7.5-1 -> 1.7.6-1)
    [2013-05-09 20:02] [PACMAN] upgraded efreet (1.7.5-1 -> 1.7.6-1)
    [2013-05-09 20:02] [PACMAN] upgraded emotion (1.7.5-1 -> 1.7.6-1)
    [2013-05-09 20:02] [PACMAN] upgraded ethumb (1.7.5-1 -> 1.7.6-1)
    [2013-05-09 20:02] [PACMAN] upgraded elementary (1.7.5-1 -> 1.7.6-1)
    [2013-05-09 20:02] [PACMAN] upgraded extremetuxracer (0.4-5 -> 0.4-6)
    [2013-05-09 20:02] [PACMAN] upgraded firefox (20.0.1-2 -> 20.0.1-5)
    [2013-05-09 20:02] [PACMAN] upgraded gd (2.0.36RC1-5 -> 2.0.36RC1-6)
    [2013-05-09 20:02] [PACMAN] upgraded gegl (0.2.0-7 -> 0.2.0-8)
    [2013-05-09 20:02] [PACMAN] upgraded ghostscript (9.07-1 -> 9.07-2)
    [2013-05-09 20:02] [PACMAN] upgraded libwmf (0.2.8.4-9 -> 0.2.8.4-10)
    [2013-05-09 20:02] [PACMAN] upgraded gimp (2.8.4-1 -> 2.8.4-2)
    [2013-05-09 20:02] [PACMAN] upgraded gimp-plugin-gmic (1.5.5.2-1 -> 1.5.5.2-2)
    [2013-05-09 20:02] [PACMAN] upgraded gimp-plugin-mathmap (1.3.5-2 -> 1.3.5-3)
    [2013-05-09 20:02] [PACMAN] upgraded gimp-ufraw (0.19-1 -> 0.19-2)
    [2013-05-09 20:02] [PACMAN] upgraded gnome-control-center (3.8.1-1 -> 3.8.1.5-1)
    [2013-05-09 20:02] [PACMAN] upgraded gnome-icon-theme-symbolic (3.8.0.1-1 -> 3.8.0.1-2)
    [2013-05-09 20:02] [PACMAN] upgraded gpgme (1.4.0-1 -> 1.4.1-1)
    [2013-05-09 20:02] [PACMAN] upgraded graphviz (2.30.1-2 -> 2.30.1-3)
    [2013-05-09 20:02] [PACMAN] upgraded gst-plugins-good (1.0.7-1 -> 1.0.7-2)
    [2013-05-09 20:02] [PACMAN] upgraded gstreamer0.10-bad (0.10.23-3 -> 0.10.23-4)
    [2013-05-09 20:02] [PACMAN] upgraded mjpegtools (2.0.0-2 -> 2.0.0-3)
    [2013-05-09 20:03] [PACMAN] upgraded gstreamer0.10-bad-plugins (0.10.23-3 -> 0.10.23-4)
    [2013-05-09 20:03] [PACMAN] upgraded gstreamer0.10-good (0.10.31-1 -> 0.10.31-3)
    [2013-05-09 20:03] [PACMAN] upgraded gstreamer0.10-good-plugins (0.10.31-1 -> 0.10.31-3)
    [2013-05-09 20:03] [PACMAN] upgraded imagemagick (6.8.4.10-1 -> 6.8.5.3-1)
    [2013-05-09 20:03] [PACMAN] upgraded imlib2 (1.4.5-2 -> 1.4.5-4)
    [2013-05-09 20:03] [PACMAN] upgraded libxslt (1.1.26-3 -> 1.1.28-1)
    [2013-05-09 20:03] [PACMAN] upgraded poppler-glib (0.22.3-2 -> 0.22.3-3)
    [2013-05-09 20:03] [PACMAN] upgraded inkscape (0.48.4-6 -> 0.48.4-7)
    [2013-05-09 20:03] [PACMAN] upgraded iproute2 (3.8.0-1 -> 3.9.0-1)
    [2013-05-09 20:03] [PACMAN] upgraded lib32-libpng (1.5.15-1 -> 1.6.2-1)
    [2013-05-09 20:03] [PACMAN] upgraded lib32-cairo (1.12.14-3 -> 1.12.14-4)
    [2013-05-09 20:03] [PACMAN] upgraded lib32-pango (1.34.0-1 -> 1.34.0-2)
    [2013-05-09 20:03] [PACMAN] upgraded qt4 (4.8.4-16 -> 4.8.4-17)
    [2013-05-09 20:03] [PACMAN] upgraded lib32-qt4 (4.8.4-4 -> 4.8.4-5)
    [2013-05-09 20:03] [PACMAN] upgraded lib32-systemd (202-1 -> 203-1)
    [2013-05-09 20:03] [PACMAN] upgraded libgdiplus (2.10-3 -> 2.10-4)
    [2013-05-09 20:03] [PACMAN] upgraded libgxps (0.2.2-2 -> 0.2.2-3)
    [2013-05-09 20:03] [PACMAN] upgraded libkate (0.4.1-3 -> 0.4.1-4)
    [2013-05-09 20:03] [PACMAN] upgraded libreoffice-common (4.0.2-3 -> 4.0.2-4)
    [2013-05-09 20:03] [PACMAN] upgraded libreoffice-base (4.0.2-3 -> 4.0.2-4)
    [2013-05-09 20:03] [PACMAN] upgraded libreoffice-calc (4.0.2-3 -> 4.0.2-4)
    [2013-05-09 20:03] [PACMAN] upgraded libreoffice-draw (4.0.2-3 -> 4.0.2-4)
    [2013-05-09 20:03] [PACMAN] upgraded libreoffice-extension-presentation-minimizer (4.0.2-3 -> 4.0.2-4)
    [2013-05-09 20:03] [PACMAN] upgraded libreoffice-gnome (4.0.2-3 -> 4.0.2-4)
    [2013-05-09 20:03] [PACMAN] upgraded libreoffice-impress (4.0.2-3 -> 4.0.2-4)
    [2013-05-09 20:03] [PACMAN] upgraded libreoffice-math (4.0.2-3 -> 4.0.2-4)
    [2013-05-09 20:03] [PACMAN] upgraded libreoffice-writer (4.0.2-3 -> 4.0.2-4)
    [2013-05-09 20:03] [PACMAN] upgraded libtracker-sparql (0.16.0-4 -> 0.16.1-1)
    [2013-05-09 20:03] [PACMAN] upgraded libwebp (0.3.0-1 -> 0.3.0-3)
    [2013-05-09 20:03] [PACMAN] upgraded mkinitcpio (0.13.0-1 -> 0.14.0-1)
    [2013-05-09 20:03] [PACMAN] upgraded mono (2.10.8-2 -> 2.10.9-1)
    [2013-05-09 20:03] [PACMAN] upgraded pinentry (0.8.2-2 -> 0.8.3-1)
    [2013-05-09 20:03] [PACMAN] upgraded plotutils (2.6-3 -> 2.6-5)
    [2013-05-09 20:03] [PACMAN] upgraded python-matplotlib (1.2.1-1 -> 1.2.1-2)
    [2013-05-09 20:03] [PACMAN] upgraded qtwebkit (2.3.1-1 -> 2.3.1-2)
    [2013-05-09 20:03] [PACMAN] upgraded sdl_image (1.2.12-2 -> 1.2.12-3)
    [2013-05-09 20:03] [PACMAN] upgraded system-config-printer (1.3.12-2 -> 1.4.0-1)
    [2013-05-09 20:03] [PACMAN] upgraded systemd-sysvcompat (202-2 -> 203-2)
    [2013-05-09 20:03] [ALPM-SCRIPTLET] >>> texlive: updating the filename database...
    [2013-05-09 20:03] [ALPM-SCRIPTLET] mktexlsr: Updating /etc/texmf/ls-R...
    [2013-05-09 20:03] [ALPM-SCRIPTLET] mktexlsr: Updating /usr/share/texmf/ls-R...
    [2013-05-09 20:03] [ALPM-SCRIPTLET] mktexlsr: Updating /usr/share/texmf-dist/ls-R...
    [2013-05-09 20:03] [ALPM-SCRIPTLET] mktexlsr: Updating /var/lib/texmf/ls-R...
    [2013-05-09 20:03] [ALPM-SCRIPTLET] mktexlsr: Done.
    [2013-05-09 20:03] [ALPM-SCRIPTLET] recreating all formats... done.
    [2013-05-09 20:03] [ALPM-SCRIPTLET] (logs are under /var/lib/texmf/web2c/<engine>/<formatname>.log)
    [2013-05-09 20:03] [PACMAN] upgraded texlive-bin (2012.0-10 -> 2012.0-11)
    [2013-05-09 20:03] [PACMAN] upgraded tracker (0.16.0-4 -> 0.16.1-1)
    [2013-05-09 20:03] [PACMAN] upgraded zvbi (0.2.33-4 -> 0.2.33-5)
    [2013-05-09 20:03] [PACMAN] upgraded vlc (2.0.6-1 -> 2.0.6-2)
    [2013-05-09 20:03] [PACMAN] upgraded webkitgtk3 (2.0.1-1 -> 2.0.1-2)
    [2013-05-09 20:03] [PACMAN] upgraded wxgtk (2.8.12.1-4 -> 2.8.12.1-5)
    [2013-05-09 20:03] [PACMAN] upgraded youtube-dl (2013.04.31-1 -> 2013.05.07-1)
    I update again since, so my system is up to date.
    Last edited by Cthulhu82 (2013-05-12 12:35:47)

    Can you connect with another protocol, like MSN?
    Does your ISP support ipV6????
    (11:25:38) dnsquery: Performing DNS lookup for xmpp.l.google.com
    (11:25:38) dns: Created new DNS child 2892, there are now 1 children.
    (11:25:38) dns: Successfully sent DNS request to child 2892
    (11:25:38) dns: Got response for 'xmpp.l.google.com'
    (11:25:38) dnsquery: IP resolved for xmpp.l.google.com
    (11:25:38) proxy: Attempting connection to 2a00:1450:400c:c00::7d
    (11:25:38) proxy: Connecting to xmpp.l.google.com:5222 with no proxy
    (11:25:38) proxy: Connection in progress
    If not the disable ipV6 by editing/creating
    /etc/sysctl.d/ipv6.conf
    # Disable IPv6
    net.ipv6.conf.all.disable_ipv6 = 1
    net.ipv6.conf.<interface0>.disable_ipv6 = 1
    net.ipv6.conf.<interfaceN>.disable_ipv6 = 1
    afterwards reboot & retry

  • [SOLVED]Matplotlib doesn't build (perhaps Python issue)

    Hi there,
    when trying to install `python2-matplotlib-noqt` I ve run into the following error:
    Traceback (most recent call last):
    File "setup.py", line 155, in <module>
    result = package.check()
    File "/tmp/yaourt-tmp-alex/aur-python2-matplotlib-noqt/src/matplotlib-1.4.2/setupext.py", line 1729, in check
    return super(BackendGtkAgg, self).check()
    File "/tmp/yaourt-tmp-alex/aur-python2-matplotlib-noqt/src/matplotlib-1.4.2/setupext.py", line 504, in check
    additional_info = self.check_requirements()
    File "/tmp/yaourt-tmp-alex/aur-python2-matplotlib-noqt/src/matplotlib-1.4.2/setupext.py", line 1626, in check_requirements
    import gtk
    File "/usr/lib/python2.7/site-packages/gtk-2.0/gtk/__init__.py", line 45, in <module>
    from gtk.deprecation import _Deprecated, _DeprecatedConstant
    ValueError: bad marshal data (unknown type code)
    ==> ERROR: A failure occurred in build().
    Aborting...
    ==> ERROR: Makepkg was unable to build python2-matplotlib-noqt.
    Googling suggests that the problem is incompatibility between matplotlib and python versions. So I updated python to version 3.4, but pkgbuid still pulls file from `/usr/lib/python2.7`,though this particular version is not explicitly set in `PKGBUILD`:
    pkgname=python2-matplotlib-noqt
    pkgver=1.4.2
    pkgrel=1
    pkgdesc="A python plotting library, making publication quality plots"
    arch=('i686' 'x86_64')
    url='http://matplotlib.org'
    license=('custom')
    depends=('python2-pytz' 'python2-numpy' 'python2-cairo' 'python2-dateutil' 'python2-pyparsing')
    makedepends=('python2-pytz' 'python2-numpy' 'tk' 'python2-cairo' 'python2-dateutil'
    'python2-gobject' 'python2-pyparsing' 'pygtk' 'python-six' 'ghostscript' 'texlive-bin')
    optdepends=('python-gobject: for GTK3Agg/GTK3Cairo backend'
    'python-cairo: for GTK3Cairo backend'
    'tk: used by the TkAgg backend'
    'ghostscript: usetex dependencies'
    'texlive-bin: usetex dependencies'
    'python-tornado: for webagg backend')
    source=("https://github.com/matplotlib/matplotlib/archive/v$pkgver.tar.gz")
    sha512sums=('60e7cca791fe607f17db85e5e5a85d4a503c7ae584cd0333ff271ca0a92acbb3f08774c2d0f6e03414a1fe116187d0bcf5c47d29935e77c5a0e91e493db8333f')
    prepare() {
    cd matplotlib-${pkgver}
    for file in $(find . -name '*.py' -print); do
    sed -i -e "s|^#!.*/usr/bin/python|#!/usr/bin/python2|" \
    -e "s|^#!.*/usr/bin/env *python|#!/usr/bin/env python2|" ${file}
    done
    build() {
    cd matplotlib-${pkgver}
    python2 setup.py build
    package() {
    cd matplotlib-${pkgver}
    python2 setup.py install -O1 --skip-build --root "${pkgdir}" --prefix=/usr
    install -dm755 "${pkgdir}"/usr/share/licenses/python2-matplotlib-noqt
    install -m 644 doc/users/license.rst "${pkgdir}"/usr/share/licenses/python2-matplotlib-noqt
    i'm at a loss
    Last edited by L1ghtmareI (2014-11-02 10:22:46)

    First of all, you should be clear about what's you are doing. You are trying to build python2-matplotlib-noqt from the AUR. Bugs in the AUR packages must be mentioned/discussed in the comment of that package. I don't see how this package disable the qt dependency besides nor requiring it, but I have not investigate the build process of matplotlib. What I would suggest is to try to build the official python-matplotlib package and make the modification yourself so that it does not depend of qt, if you know how to do it. If not, simply install the official package.
    Last edited by olive (2014-11-01 21:59:41)

  • [SOLVED] Upgrade from twisted to python-twisted breaks deluge-gtk.

    So I just performed the following upgrades (I had to remove twisted before updating, because it would not upgrade from twisted to python-twisted directly. See the bottom of this post):
    [2014-05-21 20:21] [PACMAN] Running 'pacman -R twisted'
    [2014-05-21 20:21] [PACMAN] Running 'pacman -Rdd twisted'
    [2014-05-21 20:21] [PACMAN] removed twisted (13.2.0-1)
    [2014-05-21 20:21] [PACMAN] Running 'pacman -S python-twisted'
    [2014-05-21 20:21] [PACMAN] installed python-crypto (2.6.1-2)
    [2014-05-21 20:21] [PACMAN] installed python-zope-interface (4.1.1-1)
    [2014-05-21 20:21] [PACMAN] installed python-twisted (14.0.0-1)
    [2014-05-21 20:22] [PACMAN] Running 'pacman -Su
    [2014-05-21 20:22] [PACMAN] starting full system upgrade
    [2014-05-21 20:22] [PACMAN] upgraded ffmpeg (1:2.2.2-2 -> 1:2.2.2-3)
    [2014-05-21 20:22] [PACMAN] upgraded mesa (10.1.3-1 -> 10.1.4-1)
    [2014-05-21 20:22] [PACMAN] upgraded lib32-mesa (10.1.3-1 -> 10.1.4-1)
    [2014-05-21 20:22] [PACMAN] upgraded netctl (1.6-1 -> 1.7-1)
    [2014-05-21 20:22] [PACMAN] upgraded perl-net-ssleay (1.61-1 -> 1.63-1)
    [2014-05-21 20:22] [PACMAN] upgraded python (3.4.0-3 -> 3.4.1-1)
    [2014-05-21 20:22] [ALPM-SCRIPTLET] If you get distorted sound in skype, try adding PULSE_LATENCY_MSEC=60 to your
    [2014-05-21 20:22] [ALPM-SCRIPTLET] env before starting skype. Something like 'export PULSE_LATENCY_MSEC=60' in .bashrc, for example.
    [2014-05-21 20:22] [PACMAN] upgraded skype (4.2.0.13-3 -> 4.2.0.13-4)
    [2014-05-21 20:22] [PACMAN] upgraded xf86-input-evdev (2.8.4-1 -> 2.9.0-1)
    Now when I start deluge-gtk, I get this:
    claire ~ % deluge-gtk
    Traceback (most recent call last):
    File "/usr/bin/deluge-gtk", line 9, in <module>
    load_entry_point('deluge==1.3.6', 'gui_scripts', 'deluge-gtk')()
    File "/usr/lib/python2.7/site-packages/pkg_resources.py", line 356, in load_entry_point
    return get_distribution(dist).load_entry_point(group, name)
    File "/usr/lib/python2.7/site-packages/pkg_resources.py", line 2431, in load_entry_point
    return ep.load()
    File "/usr/lib/python2.7/site-packages/pkg_resources.py", line 2147, in load
    ['__name__'])
    File "/usr/lib/python2.7/site-packages/deluge/ui/gtkui/__init__.py", line 1, in <module>
    from gtkui import start
    File "/usr/lib/python2.7/site-packages/deluge/ui/gtkui/gtkui.py", line 41, in <module>
    from twisted.internet import gtk2reactor
    ImportError: No module named twisted.internet
    Downgrading back to twisted resolved the problem. Any ideas?
    ======
    In case you're wondering about my problems with twisted to python-twisted upgrade, here's the terminal output:
    claire ~ % sudo pacman -Su --ignore=chromium
    :: Starting full system upgrade...
    :: Replace twisted with extra/python2-twisted? [Y/n] y
    resolving dependencies...
    looking for inter-conflicts...
    Packages (2):
    Name Old Version New Version Net Change
    extra/python2-twisted 14.0.0-1 36.56 MiB
    twisted 13.2.0-1 -34.62 MiB
    Total Installed Size: 36.56 MiB
    Net Upgrade Size: 1.95 MiB
    :: Proceed with installation? [Y/n] y
    (1/1) checking keys in keyring [----------------------] 100%
    (1/1) checking package integrity [----------------------] 100%
    (1/1) loading package files [----------------------] 100%
    (1/1) checking for file conflicts [----------------------] 100%
    error: failed to commit transaction (conflicting files)
    python2-twisted: /usr/lib/python2.7/site-packages/twisted/plugins/dropin.cache exists in filesystem
    Errors occurred, no packages were upgraded.
    Last edited by clfarron4 (2014-05-21 21:12:56)

    olantwin wrote:
    Have you tried (re)moving the conflicting file and then upgrading twisted to python2-twisted? (see this related thread: https://bbs.archlinux.org/viewtopic.php?id=181828 )
    I just upgraded twisted after having the same conflict, and deluge-gtk does not throw any errors and seems to work fine.
    Are you using the daemon+client or just deluge-gtk?
    Hmph... So renaming the .cache file and then upgrading solved everything. As much as I don't like to do that with conflicting files, it worked.
    Marking as [SOLVED].
    Last edited by clfarron4 (2014-05-21 21:13:27)

  • Is Dbus going to be upgraded with Python?

    Python 2.5 is now in testing. Upgrading Python is going to require a gigantic amount recompiling of programs. Wouldn't this be the best time to upgrade DBus to 1.0?

    AndyRTR wrote:we plan to upgrade dbus together with the next gnome release.
    Ok thanks for the information

  • Python upgrade

    Hi,
    I would like to know what is the proper way of upgrading Python ver. 2.3.5 on a Mac OS 10.4.11 (Tiger) to the version 2.5.2 or the latest version 2.6.
    I downloaded the Python ver. 2.5.2 tar ball from the Python web site and ran the “configure”, “make” and “sudo make install” commands without any problem. However, when I launch the Python in the terminal it shows that it is version 2.3.5.
    Thanks in advance.

    Hi hk1008, and a warm welcome to the forums!
    Beyond Kappy's good advice, since you seem to have it on Tiger, (didn't think it possible!), perhaps some clues here for you...
    http://wiki.python.org/moin/MacPython/Leopard

  • [S]Systemd can't start Load Kernel Modules after upgrade to Linux 4.0

    After upgrading from linux 3.19.3-3 to 4.0.1-1 I've been having a bit of an issue. At that same time I upgraded readline (6.3.006-1 → 6.3.008-1), linux-firmware (20150206.17657c3-1 → 20150410.ec89525-1), nvidia (349.16-1 → 349.16-2) , wpa_suplican (2.4-1 → 1:2.3-1), and  arpack (3.1.5-1 → 3.2.0-1). There may be some typos there since I'm copying by hand. Normally this wouldn't be much of a problem because I have been, priory to a few weeks ago, really good about back ups and would just roll my OS back 15 minutes. But things like that tend to fly out the window when the semester gets heavy. My last snapshot was on May 22nd, which I could still use, but would rather not. Also, it seems like a good idea to try to actual fix things for a change.
    [edit] I should mention that this upgrade was run April 30th.[/edit]
    When I finished booting the system after the upgrade, I got an error message during boot “systemd[1]: Failed to start Load Kernel Modules.” When it finished booting I run “dmesg -l err” to confirm that I'm not having a bad day dream or something. I'm also still seeing the errors that I described in this thread. Don't know if the two are related. I also noticed, when I was logging in, that it said that my stystem was still using the old kernel. Indeed, according to “uname -r” I'm still using 3.19.3-3-ARCH.
    The closest thing to experience I have with this is when I forget to mount /boot before upgrading linux, so I made sure /boot was mounted and rand “sudo pacman -S linux” to reinstall, but this didn't help. Just to check I ran “ls /lib/modules” and see the directorys “4.0.1-1-ARCH” and “extramodules-4.0-ARCH” as I would expect after a succesful upgrade of the kernel.
    Running “systemctl –failed, shows that in addition to systemd-modules-load.service, lm_sensors.service has also failed. I somehow expect lm_sensors depends on systemd-modules-load. I tried “systemctl restart systemd-modules-load”, but was rewarded with a message telling me that it failed. The “journalctl -xe” log has the lines
    systemd[1]: system-modules-load[1799]: Failed to look up alias 'sg': Function not implemented
    systemd[1]: system-modules-load[1799]: Failed to look up alias 'nfs': Function not implemented
    Looking at the Wiki for Systemd under troubleshooting it actually has an example of trying to work through this exact issue. Following that I tried
    journalctl _PID=1799
    systemd[1]: system-modules-load[1799]: Failed to look up alias 'sg': Function not implemented
    systemd[1]: system-modules-load[1799]: Failed to look up alias 'nfs': Function not implemented
    which I already mentioned. At this point that bit of the Wiki stopped being useful.
    Looking up on Google Failed to look up alias 'nfs': Function not implemented returned this thread from two years ago. Running “lsmod |grep sg” or $lsmod |grep nfs” returns nothing, but it also returns nothing on this laptop I'm using as well, so I don't imagine that is useful. Also, “# grep nfs /lib/modules/4.0.1-1-ARCH/modules.alias” returns a “Nosuch file or directory” error.
    Searching for something on 'sg' turned up https://bbs.archlinux.org/viewtopic.php?id=165361, which was also not useful.
    As a sort of last resort I tried https://wiki.archlinux.org/index.php/Do … the_kernel
    I reboot and boot into my fallback installation, running 3.19.3-3, mount the partition with my main Arch on it, and arch-chroot into it.
    I downgraded linux, and nvidia, exited chroot, and rebooted hoping to the Great Bacon that I didn't do anything too damaging. After all, my back ups are more than a week out of date.
    This worked. I'm still getting those annyoing (they are only annoying right?) error messages I mentioned earlier. My system seems fine, if somewhat out of date.
    Still, the question remains, “why did that happen, and how do I actually fix it?”
    [edit2=solution]
    There were two problems. First, my grub.cfg entry was pointing to the wrong UUID. I fixed this by regenerating it. Then I noticed the UUID in the grub menu itself (during the boot prosses) did not match what was in grub.cfg. To fix this I reinstalled grub.
    Last edited by nstgc (2015-05-05 12:07:30)

    Well, I took snapshots, not back ups but they work well enough for this, and rsynced /boot/ to where it use to be, moved/renamed the subvolume boot, and commented out the appropriate line in fstab. I also deleted that other /boot from before. I unmount /boot, and regenerate my grub.cfg. If my machine still boots, I'll try for an upgrade.
    grub.cfg now looks like
    # DO NOT EDIT THIS FILE
    # It is automatically generated by grub-mkconfig using templates
    # from /etc/grub.d and settings from /etc/default/grub
    ### BEGIN /etc/grub.d/00_header ###
    insmod part_gpt
    insmod part_msdos
    if [ -s $prefix/grubenv ]; then
    load_env
    fi
    if [ "${next_entry}" ] ; then
    set default="${next_entry}"
    set next_entry=
    save_env next_entry
    set boot_once=true
    else
    set default="0"
    fi
    if [ x"${feature_menuentry_id}" = xy ]; then
    menuentry_id_option="--id"
    else
    menuentry_id_option=""
    fi
    export menuentry_id_option
    if [ "${prev_saved_entry}" ]; then
    set saved_entry="${prev_saved_entry}"
    save_env saved_entry
    set prev_saved_entry=
    save_env prev_saved_entry
    set boot_once=true
    fi
    function savedefault {
    if [ -z "${boot_once}" ]; then
    saved_entry="${chosen}"
    save_env saved_entry
    fi
    function load_video {
    if [ x$feature_all_video_module = xy ]; then
    insmod all_video
    else
    insmod efi_gop
    insmod efi_uga
    insmod ieee1275_fb
    insmod vbe
    insmod vga
    insmod video_bochs
    insmod video_cirrus
    fi
    if [ x$feature_default_font_path = xy ] ; then
    font=unicode
    else
    insmod part_msdos
    insmod part_msdos
    insmod part_msdos
    insmod btrfs
    set root='hd4,msdos1'
    if [ x$feature_platform_search_hint = xy ]; then
    search --no-floppy --fs-uuid --set=root --hint-bios=hd4,msdos1 --hint-efi=hd4,msdos1 --hint-baremetal=ahci4,msdos1 --hint-bios=hd1,msdos2 --hint-efi=hd1,msdos2 --hint-baremetal=ahci1,msdos2 --hint-bios=hd5,msdos4 --hint-efi=hd5,msdos4 --hint-baremetal=ahci5,msdos4 3873d8ba-9472-4d92-ab0d-e94574bd0eae
    else
    search --no-floppy --fs-uuid --set=root 3873d8ba-9472-4d92-ab0d-e94574bd0eae
    fi
    font="/arch/usr/share/grub/unicode.pf2"
    fi
    if loadfont $font ; then
    set gfxmode=auto
    load_video
    insmod gfxterm
    set locale_dir=$prefix/locale
    set lang=en_US
    insmod gettext
    fi
    terminal_input console
    terminal_output gfxterm
    if [ x$feature_timeout_style = xy ] ; then
    set timeout_style=menu
    set timeout=5
    # Fallback normal timeout code in case the timeout_style feature is
    # unavailable.
    else
    set timeout=5
    fi
    ### END /etc/grub.d/00_header ###
    ### BEGIN /etc/grub.d/10_linux ###
    menuentry 'Arch Linux' --class arch --class gnu-linux --class gnu --class os $menuentry_id_option 'gnulinux-simple-3873d8ba-9472-4d92-ab0d-e94574bd0eae' {
    load_video
    set gfxpayload=keep
    insmod gzio
    insmod part_msdos
    insmod part_msdos
    insmod part_msdos
    insmod btrfs
    set root='hd4,msdos1'
    if [ x$feature_platform_search_hint = xy ]; then
    search --no-floppy --fs-uuid --set=root --hint-bios=hd4,msdos1 --hint-efi=hd4,msdos1 --hint-baremetal=ahci4,msdos1 --hint-bios=hd1,msdos2 --hint-efi=hd1,msdos2 --hint-baremetal=ahci1,msdos2 --hint-bios=hd5,msdos4 --hint-efi=hd5,msdos4 --hint-baremetal=ahci5,msdos4 3873d8ba-9472-4d92-ab0d-e94574bd0eae
    else
    search --no-floppy --fs-uuid --set=root 3873d8ba-9472-4d92-ab0d-e94574bd0eae
    fi
    echo 'Loading Linux linux ...'
    linux /arch/boot/vmlinuz-linux root=UUID=3873d8ba-9472-4d92-ab0d-e94574bd0eae rw rootflags=subvol=arch quiet
    echo 'Loading initial ramdisk ...'
    initrd /arch/boot/intel-ucode.img /arch/boot/initramfs-linux.img
    submenu 'Advanced options for Arch Linux' $menuentry_id_option 'gnulinux-advanced-3873d8ba-9472-4d92-ab0d-e94574bd0eae' {
    menuentry 'Arch Linux, with Linux linux' --class arch --class gnu-linux --class gnu --class os $menuentry_id_option 'gnulinux-linux-advanced-3873d8ba-9472-4d92-ab0d-e94574bd0eae' {
    load_video
    set gfxpayload=keep
    insmod gzio
    insmod part_msdos
    insmod part_msdos
    insmod part_msdos
    insmod btrfs
    set root='hd4,msdos1'
    if [ x$feature_platform_search_hint = xy ]; then
    search --no-floppy --fs-uuid --set=root --hint-bios=hd4,msdos1 --hint-efi=hd4,msdos1 --hint-baremetal=ahci4,msdos1 --hint-bios=hd1,msdos2 --hint-efi=hd1,msdos2 --hint-baremetal=ahci1,msdos2 --hint-bios=hd5,msdos4 --hint-efi=hd5,msdos4 --hint-baremetal=ahci5,msdos4 3873d8ba-9472-4d92-ab0d-e94574bd0eae
    else
    search --no-floppy --fs-uuid --set=root 3873d8ba-9472-4d92-ab0d-e94574bd0eae
    fi
    echo 'Loading Linux linux ...'
    linux /arch/boot/vmlinuz-linux root=UUID=3873d8ba-9472-4d92-ab0d-e94574bd0eae rw rootflags=subvol=arch quiet
    echo 'Loading initial ramdisk ...'
    initrd /arch/boot/intel-ucode.img /arch/boot/initramfs-linux.img
    menuentry 'Arch Linux, with Linux linux (fallback initramfs)' --class arch --class gnu-linux --class gnu --class os $menuentry_id_option 'gnulinux-linux-fallback-3873d8ba-9472-4d92-ab0d-e94574bd0eae' {
    load_video
    set gfxpayload=keep
    insmod gzio
    insmod part_msdos
    insmod part_msdos
    insmod part_msdos
    insmod btrfs
    set root='hd4,msdos1'
    if [ x$feature_platform_search_hint = xy ]; then
    search --no-floppy --fs-uuid --set=root --hint-bios=hd4,msdos1 --hint-efi=hd4,msdos1 --hint-baremetal=ahci4,msdos1 --hint-bios=hd1,msdos2 --hint-efi=hd1,msdos2 --hint-baremetal=ahci1,msdos2 --hint-bios=hd5,msdos4 --hint-efi=hd5,msdos4 --hint-baremetal=ahci5,msdos4 3873d8ba-9472-4d92-ab0d-e94574bd0eae
    else
    search --no-floppy --fs-uuid --set=root 3873d8ba-9472-4d92-ab0d-e94574bd0eae
    fi
    echo 'Loading Linux linux ...'
    linux /arch/boot/vmlinuz-linux root=UUID=3873d8ba-9472-4d92-ab0d-e94574bd0eae rw rootflags=subvol=arch quiet
    echo 'Loading initial ramdisk ...'
    initrd /arch/boot/intel-ucode.img /arch/boot/initramfs-linux-fallback.img
    ### END /etc/grub.d/10_linux ###
    ### BEGIN /etc/grub.d/20_linux_xen ###
    ### END /etc/grub.d/20_linux_xen ###
    ### BEGIN /etc/grub.d/30_os-prober ###
    menuentry 'Windows Vista (loader) (on /dev/sdd2)' --class windows --class os $menuentry_id_option 'osprober-chain-30F403F0F403B75E' {
    insmod part_gpt
    insmod ntfs
    set root='hd3,gpt2'
    if [ x$feature_platform_search_hint = xy ]; then
    search --no-floppy --fs-uuid --set=root --hint-bios=hd3,gpt2 --hint-efi=hd3,gpt2 --hint-baremetal=ahci3,gpt2 30F403F0F403B75E
    else
    search --no-floppy --fs-uuid --set=root 30F403F0F403B75E
    fi
    chainloader +1
    menuentry 'Windows Vista (loader) (on /dev/sdd4)' --class windows --class os $menuentry_id_option 'osprober-chain-FE2648382647EFE7' {
    insmod part_gpt
    insmod ntfs
    set root='hd3,gpt4'
    if [ x$feature_platform_search_hint = xy ]; then
    search --no-floppy --fs-uuid --set=root --hint-bios=hd3,gpt4 --hint-efi=hd3,gpt4 --hint-baremetal=ahci3,gpt4 FE2648382647EFE7
    else
    search --no-floppy --fs-uuid --set=root FE2648382647EFE7
    fi
    chainloader +1
    menuentry 'Arch (on /dev/sdd5)' --class gnu-linux --class gnu --class os $menuentry_id_option 'osprober-gnulinux-simple-832bcc8d-836e-4b4e-8d9c-0a19f5bcf7dd' {
    insmod part_gpt
    insmod ext2
    set root='hd3,gpt5'
    if [ x$feature_platform_search_hint = xy ]; then
    search --no-floppy --fs-uuid --set=root --hint-bios=hd3,gpt5 --hint-efi=hd3,gpt5 --hint-baremetal=ahci3,gpt5 832bcc8d-836e-4b4e-8d9c-0a19f5bcf7dd
    else
    search --no-floppy --fs-uuid --set=root 832bcc8d-836e-4b4e-8d9c-0a19f5bcf7dd
    fi
    linux /boot/vmlinuz-linux root=/dev/sdd5
    initrd /boot/initramfs-linux.img
    submenu 'Advanced options for Arch (on /dev/sdd5)' $menuentry_id_option 'osprober-gnulinux-advanced-832bcc8d-836e-4b4e-8d9c-0a19f5bcf7dd' {
    menuentry 'Arch (on /dev/sdd5)' --class gnu-linux --class gnu --class os $menuentry_id_option 'osprober-gnulinux-/boot/vmlinuz-linux--832bcc8d-836e-4b4e-8d9c-0a19f5bcf7dd' {
    insmod part_gpt
    insmod ext2
    set root='hd3,gpt5'
    if [ x$feature_platform_search_hint = xy ]; then
    search --no-floppy --fs-uuid --set=root --hint-bios=hd3,gpt5 --hint-efi=hd3,gpt5 --hint-baremetal=ahci3,gpt5 832bcc8d-836e-4b4e-8d9c-0a19f5bcf7dd
    else
    search --no-floppy --fs-uuid --set=root 832bcc8d-836e-4b4e-8d9c-0a19f5bcf7dd
    fi
    linux /boot/vmlinuz-linux root=/dev/sdd5
    initrd /boot/initramfs-linux.img
    ### END /etc/grub.d/30_os-prober ###
    ### BEGIN /etc/grub.d/40_custom ###
    # This file provides an easy way to add custom menu entries. Simply type the
    # menu entries you want to add after this comment. Be careful not to change
    # the 'exec tail' line above.
    ### END /etc/grub.d/40_custom ###
    ### BEGIN /etc/grub.d/41_custom ###
    if [ -f ${config_directory}/custom.cfg ]; then
    source ${config_directory}/custom.cfg
    elif [ -z "${config_directory}" -a -f $prefix/custom.cfg ]; then
    source $prefix/custom.cfg;
    fi
    ### END /etc/grub.d/41_custom ###
    ### BEGIN /etc/grub.d/60_memtest86+ ###
    if [ "${grub_platform}" == "pc" ]; then
    menuentry "Memory Tester (memtest86+)" --class memtest86 --class gnu --class tool {
    search --fs-uuid --no-floppy --set=root --hint-bios=hd4,msdos1 --hint-efi=hd4,msdos1 --hint-baremetal=ahci4,msdos1 --hint-bios=hd1,msdos2 --hint-efi=hd1,msdos2 --hint-baremetal=ahci1,msdos2 --hint-bios=hd5,msdos4 --hint-efi=hd5,msdos4 --hint-baremetal=ahci5,msdos4 3873d8ba-9472-4d92-ab0d-e94574bd0eae
    linux16 /arch/boot/memtest86+/memtest.bin
    fi
    ### END /etc/grub.d/60_memtest86+ ###
    It seems as if the lines you mentioned, Scimmia, have changed. I'll take that as a good sign.
    [edit] System still boots. Trying for the upgrade.
    [edit2] Still can't use Linux 4.0. I'm getting the same errors as before.
    [edit3] Successfully downgraded.
    [edit4] I looked through /etc/mkinitcpio.conf and there isn't anything in there that isn't in my laptop's. I don't know if this will help, but here is the output of "pacman -Q"
    a52dec 0.7.4-8
    aalib 1.4rc5-10
    abs 2.4.4-2
    accountsservice 0.6.40-1
    acl 2.2.52-2
    adobe-source-han-sans-jp-fonts 1.002-1
    adwaita-icon-theme 3.16.0-1
    alsa-lib 1.0.29-1
    alsa-plugins 1.0.29-2
    alsa-utils 1.0.29-1
    alsi 0.4.7-1
    arch-install-scripts 15-1
    arch-wiki-docs 20150219-1
    arch-wiki-lite 20150219-2
    archlinux-keyring 20150212-1
    arpack 3.2.0-1
    aspell 0.60.6.1-2
    asunder 2.7-1
    at-spi2-atk 2.16.0-1
    at-spi2-core 2.16.0-1
    atk 2.16.0-1
    atkmm 2.22.7-1
    attr 2.4.47-1
    autoconf 2.69-2
    automake 1.15-1
    avahi 0.6.31-15
    awesome 3.5.6-1
    bash 4.3.033-1
    bash-completion 2.1-5
    bc 1.06.95-1
    bcache-tools 1.0.8-1
    bigpkg 0.4.0-2
    binutils 2.25-2
    bison 3.0.4-1
    blas 3.5.0-1
    bluez 5.30-1
    bluez-libs 5.30-1
    bonnie++ 1.97-1
    boost 1.58.0-1
    boost-libs 1.58.0-1
    btrfs-progs 3.19.1-1
    bullet 2.82-1
    bzip2 1.0.6-5
    ca-certificates 20150402-1
    ca-certificates-cacert 20140824-2
    ca-certificates-mozilla 3.18-3
    ca-certificates-utils 20150402-1
    cabextract 1.4-3
    cairo 1.14.2-1
    cairo-clock 0.3.4-4
    cairo-dock 3.4.1-1
    cairo-dock-plug-ins 3.4.1-1
    cairomm 1.10.0-3
    calibre 2.27.0-1
    cantarell-fonts 0.0.16-2
    caribou 0.4.18.1-1
    cddb-py 1.4-7
    cdparanoia 10.2-5
    cdrdao 1.2.3-7
    cdrtools 3.01a28-1
    celt 0.11.3-2
    cfv 1.18.3-6
    cheese 3.16.1-1
    chmlib 0.40-4
    chromaprint 1.1-2
    chromium 42.0.2311.135-1
    chromium-pepper-flash 1:17.0.0.169-3
    cifs-utils 6.4-1
    cinnamon-desktop 2.4.2-1
    cinnamon-translations 2.4.4-1
    clementine 1.2.3-5
    clucene 2.3.3.4-8
    clutter 1.22.0-2
    clutter-gst2 2.0.14-1
    clutter-gtk 1.6.0-2
    cmus 2.6.0-4
    cogl 1.20.0-1
    colord 1.2.9-2
    colord-gtk 0.1.26-2
    compositeproto 0.4.2-3
    confuse 2.7-3
    coreutils 8.23-1
    cracklib 2.9.4-1
    cryptsetup 1.6.6-1
    cups 2.0.2-4
    cups-filters 1.0.68-1
    cups-pk-helper 0.2.5-1
    curl 7.42.0-1
    damageproto 1.2.1-3
    db 5.3.28-2
    dbus 1.8.16-2
    dbus-glib 0.102-2
    dconf 0.24.0-1
    desktop-file-utils 0.22-1
    device-mapper 2.02.116-1
    dhclient 4.3.2-1
    dhcpcd 6.8.1-1
    dia 0.97.3-1
    dialog 1:1.2_20150225-1
    dictd 1.12.1-4
    diffutils 3.3-2
    ding-libs 0.4.0-3
    djvulibre 3.5.27-1
    dnssec-anchors 20150403-1
    dotconf 1.3-4
    dri2proto 2.8-2
    dri3proto 1.0-1
    dvd+rw-tools 7.1-5
    dvdisaster 0.72.6-1
    e2fsprogs 1.42.12-2
    ecryptfs-utils 106-1
    ed 1.11-1
    efl 1.13.2-1
    elementary 1.13.2-1
    elfutils 0.161-3
    enca 1.16-1
    enchant 1.6.0-5
    enlightenment 0.19.4-1
    evas_generic_loaders 1.13.2-1
    evince 3.16.0-1
    exempi 2.2.2-1
    exfat-utils 1.1.1-1
    exif-py 1.2.0-1
    exiv2 0.24-1
    expac 4-3
    expat 2.1.0-4
    extcalc 0.9.3_1-3
    faac 1.28-5
    faad2 2.7-4
    fakeroot 1.20.2-1
    fbreader 0.99.4-4
    ffmpeg 1:2.6.2-1
    fftw 3.3.4-1
    file 5.22-1
    file-roller 3.16.1-1
    filesystem 2015.02-1
    findutils 4.4.2-6
    firefox 37.0.2-1
    fixesproto 5.0-3
    flac 1.3.1-1
    flashplugin 11.2.202.457-1
    flex 2.5.39-1
    fltk 1.3.3-4
    fluidsynth 1.1.6-4
    fontconfig 2.11.1-1
    fontsproto 2.1.3-1
    foomatic-db 3:20150308-1
    foomatic-db-engine 3:20150308-1
    freetype2 2.5.5-1
    fribidi 0.19.6-2
    fsarchiver 0.6.19-1
    fuse 2.9.3-2
    fuse-exfat 1.1.0-1
    gawk 4.1.2-1
    gc 7.4.2-2
    gcc-fortran 4.9.2-4
    gcc-libs-multilib 4.9.2-4
    gcc-multilib 4.9.2-4
    gconf 3.2.6-3
    gcr 3.15.92-1
    gd 2.1.1-2
    gdb 7.9-1
    gdbm 1.11-1
    gdk-pixbuf2 2.31.3-1
    geany 1.24.1-1
    gemrb 0.8.2-1
    geoclue 0.12.99-2
    geoclue2 2.2.0-2
    geocode-glib 3.16.0-1
    gettext 0.19.4-1
    ghostscript 9.16-1
    giflib 5.1.1-1
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    pms 1.90.1-1
    podofo 0.9.3-1
    polkit 0.112-2
    poppler 0.32.0-1
    poppler-glib 0.32.0-1
    poppler-qt5 0.32.0-1
    popt 1.16-7
    portaudio 19_20140130-1
    presentproto 1.0-1
    printproto 1.0.5-3
    procps-ng 3.3.10-2
    protobuf 2.6.1-1
    psmisc 22.21-2
    pth 2.0.7-5
    pulseaudio 6.0-1
    pulseaudio-alsa 2-3
    pv 1.6.0-1
    pygobject-devel 3.16.1-1
    pygobject2-devel 2.28.6-11
    pygtk 2.24.0-5
    pyqt4-common 4.11.3-4
    pyqt5-common 5.4.1-2
    python 3.4.3-2
    python-dateutil 2.4.1-1
    python-dbus 1.2.0-4
    python-dbus-common 1.2.0-4
    python-gmpy2 2.0.5-2
    python-gobject 3.16.1-1
    python-html2text 2015.4.14-1
    python-matplotlib 1.4.3-2
    python-mpmath 0.19-1
    python-nose 1.3.6-1
    python-numexpr 2.4.3-1
    python-numpy 1.9.2-2
    python-pandas 0.16.0-2
    python-pygments 2.0.2-2
    python-pyparsing 2.0.3-1
    python-pyqt4 4.11.3-4
    python-pyqt5 5.4.1-2
    python-pytz 2015.2-1
    python-pyzmq 14.5.0-2
    python-scipy 0.15.1-2
    python-setuptools 1:15.2-1
    python-sip 4.16.7-1
    python-six 1.9.0-1
    python-sympy 0.7.6-2
    python-tornado 4.1.0-2
    python-xdg 0.25-2
    python2 2.7.9-1
    python2-apsw 3.8.9-1
    python2-atspi 2.16.0-1
    python2-beaker 1.7.0-1
    python2-cairo 1.10.0-2
    python2-chardet 2.3.0-1
    python2-cherrypy 3.6.0-1
    python2-cssselect 0.9.1-2
    python2-cssutils 1.0-2
    python2-dateutil 2.4.1-1
    python2-dbus 1.2.0-4
    python2-dnspython 1.12.0-1
    python2-gobject 3.16.1-1
    python2-gobject2 2.28.6-11
    python2-html5lib 0.999-5
    python2-lxml 3.4.4-1
    python2-mako 1.0.1-1
    python2-markupsafe 0.23-2
    python2-mechanize 0.2.5-4
    python2-netifaces 0.10.4-1
    python2-pillow 2.8.1-1
    python2-psutil 2.2.1-2
    python2-pycdio 0.20-3
    python2-pygments 2.0.2-2
    python2-pyqt5 5.4.1-2
    python2-setuptools 1:15.2-1
    python2-sip 4.16.7-1
    python2-six 1.9.0-1
    python2-xdg 0.25-2
    qca 2.0.3-5
    qca-ossl 2.0.0-7
    qjson 0.8.1-3
    qpdf 5.1.2-1
    qt4 4.8.6-5
    qt5-base 5.4.1-4
    qt5-declarative 5.4.1-4
    qt5-location 5.4.1-4
    qt5-script 5.4.1-4
    qt5-sensors 5.4.1-4
    qt5-svg 5.4.1-4
    qt5-tools 5.4.1-4
    qt5-translations 5.4.1-4
    qt5-webchannel 5.4.1-4
    qt5-webkit 5.4.1-4
    qt5-xmlpatterns 5.4.1-4
    qtchooser 48-1
    qtwebkit 2.3.4-1
    randrproto 1.4.1-1
    raptor 2.0.15-2
    rasqal 1:0.9.32-1
    readline 6.3.008-1
    recode 3.6-8
    recordproto 1.14.2-2
    redland 1:1.0.17-2
    reflector 2014.11-1
    reiserfsprogs 3.6.24-1
    renderproto 0.11.1-3
    resourceproto 1.2.0-3
    rest 0.7.93-1
    rhash 1.3.3-1
    rng-tools 5-3
    rpcbind 0.2.3-1
    rsync 3.1.1-2
    rtkit 0.11-5
    rtmpdump 20140918-2
    ruby 2.2.2-1
    s-nail 14.8.0-1
    sbc 1.3-1
    schroedinger 1.0.11-2
    scrnsaverproto 1.2.2-2
    sdcv 0.4.2-8
    sdl 1.2.15-7
    sdl_image 1.2.12-3
    sdl_mixer 1.2.12-4
    sdl_net 1.2.8-2
    sdl_ttf 2.0.11-3
    sed 4.2.2-3
    sg3_utils 1.40-1
    shadow 4.2.1-3
    shared-color-targets 0.1.5-1
    shared-mime-info 1.4-1
    sip 4.16.7-1
    slang 2.3.0-1
    smartmontools 6.3-2
    smbclient 4.2.1-1
    smpeg 0.4.5-1
    snappy 1.1.1-1
    sound-theme-freedesktop 0.8-2
    soundtouch 1.8.0-1
    spandsp 0.0.6-1
    speech-dispatcher 0.8.1-1
    speedtest-cli 0.3.1-1
    speex 1.2rc2-1
    speexdsp 1.2rc3-1
    spotify 0.9.17.1-1
    spotify-gnome-git 20141010-1
    sqlite 3.8.9-1
    startup-notification 0.12-4
    steam 1.0.0.49-3
    sudo 1.8.13-1
    suitesparse 4.4.4-1
    sysfsutils 2.1.0-9
    systemd 219-6
    systemd-sysvcompat 219-6
    t1lib 5.1.2-5
    taglib 1.9.1-1
    talloc 2.1.2-1
    tar 1.28-1
    tdb 1.3.4-1
    telepathy-glib 0.24.1-1
    telepathy-logger 0.8.1-1
    telepathy-mission-control 5.16.3-1
    terminology 0.8.0-1
    tevent 0.9.24-1
    texinfo 5.2-3
    texlive-bin 2014.34260-7
    texlive-core 2014.36709-1
    texlive-langchinese 2014.35921-1
    texlive-langcjk 2014.0-1
    texlive-langjapanese 2014.36466-1
    texlive-langkorean 2014.36573-1
    texlive-latexextra 2014.36706-1
    texlive-pictures 2014.36605-1
    texlive-science 2014.36659-1
    texmaker 4.4.1-1
    thin-provisioning-tools 0.4.1-1
    thunderbird 31.6.0-2
    tinyxml 2.6.2-3
    tmux 1.9_a-2
    totem-plparser 3.10.4-1
    transmission-gtk 2.84-1
    tsmuxer 1.10.6-14
    ttf-dejavu 2.34-2
    ttf-ms-fonts 2.0-10
    tzdata 2015d-1
    udisks2 2.1.5-1
    unrar 1:5.2.7-1
    unzip 6.0-10
    upower 0.99.2-2
    usbutils 008-1
    util-linux 2.26.1-3
    v4l-utils 1.6.2-1
    vi 1:050325-4
    videoproto 2.3.2-1
    vim 7.4.712-1
    vim-latexsuite 20130126-2
    vim-runtime 7.4.712-1
    vlc 2.2.1-2
    vte-common 0.40.0-2
    vte3 0.40.0-2
    wavpack 4.70.0-2
    wayland 1.7.0-1
    webkit2gtk 2.8.1-1
    webkitgtk 2.4.8-2
    webrtc-audio-processing 0.1-2
    wesnoth 1.12.2-2
    wesnoth-data 1.12.2-1
    wget 1.16.3-1
    which 2.21-1
    wildmidi 0.3.8-1
    wine 1.7.42-2
    winetricks 20141130-1
    wireless_tools 30.pre9-1
    wpa_supplicant 1:2.3-1
    wxgtk 3.0.2-4
    wxgtk2.8 2.8.12.1-3
    wxpython 3.0.2.0-1
    wxpython2.8 2.8.12.1-1
    x265 1.6-1
    xboxdrv 0.8.5-3
    xcb-proto 1.11-1
    xcb-util 0.4.0-1
    xcb-util-cursor 0.1.2-1
    xcb-util-image 0.4.0-1
    xcb-util-keysyms 0.4.0-1
    xcb-util-renderutil 0.3.9-1
    xcb-util-wm 0.4.1-1
    xdg-su 1.2.3-1
    xdg-utils 1.1.0.git20150323-1
    xdiskusage 1.51-1
    xextproto 7.3.0-1
    xf86-input-evdev 2.9.2-1
    xf86dgaproto 2.1-3
    xf86driproto 2.1.1-3
    xf86vidmodeproto 2.3.1-3
    xfsprogs 3.2.2-1
    xineramaproto 1.2.1-3
    xkeyboard-config 2.14-1
    xorg-appres 1.0.4-1
    xorg-bdftopcf 1.0.5-1
    xorg-font-util 1.3.1-1
    xorg-font-utils 7.6-4
    xorg-fonts-alias 1.0.3-1
    xorg-fonts-encodings 1.0.4-4
    xorg-fonts-misc 1.0.3-3
    xorg-iceauth 1.0.7-1
    xorg-mkfontdir 1.0.7-2
    xorg-mkfontscale 1.1.2-1
    xorg-server 1.17.1-5
    xorg-server-common 1.17.1-5
    xorg-server-devel 1.17.1-5
    xorg-server-utils 7.6-4
    xorg-sessreg 1.1.0-1
    xorg-setxkbmap 1.3.1-1
    xorg-util-macros 1.19.0-1
    xorg-xauth 1.0.9-1
    xorg-xbacklight 1.2.1-1
    xorg-xcmsdb 1.0.5-1
    xorg-xgamma 1.0.6-1
    xorg-xhost 1.0.7-1
    xorg-xinit 1.3.4-2
    xorg-xinput 1.6.1-1
    xorg-xkbcomp 1.3.0-1
    xorg-xmessage 1.0.4-2
    xorg-xmodmap 1.0.9-1
    xorg-xrandr 1.4.3-1
    xorg-xrdb 1.1.0-1
    xorg-xrefresh 1.0.5-1
    xorg-xset 1.2.3-1
    xorg-xsetroot 1.1.1-2
    xproto 7.0.27-1
    xscreensaver 5.32-1
    xvidcore 1.3.3-1
    xz 5.2.1-1
    yajl 2.1.0-1
    yaourt 1.5-1
    zenity 3.14.0-1
    zeromq 4.0.5-1
    zita-alsa-pcmi 0.2.0-2
    zita-resampler 1.3.0-3
    zlib 1.2.8-3
    zvbi 0.2.35-1
    zziplib 0.13.62-2
    [edit5] My /etc/modules-load.d directory is empty by the way, and "sudo /usr/lib/systemd/systemd-modules-load" returns nothing. Note, this is all while running Linux 3.19, but I believe it should demonstrate that I don't have any special modules running. Or so I believe.
    Last edited by nstgc (2015-05-04 13:16:09)

  • Upgrade OS Oracle Linux Server release 6.3 with Oracle DB 11.2.0.3.0

    Hello!
    I have Primary, two Physical Standby and one Logical Standby Servers.
    $ uname -a
    Linux host 2.6.39-200.32.1.el6uek.x86_64 #1 SMP Wed Sep 26 23:11:38 PDT 2012 x86_64 x86_64 x86_64 GNU/Linux
    $ cat /etc/issue
    Oracle Linux Server release 6.3
    SQL> select * from v$version;
    BANNER
    Oracle Database 11g Enterprise Edition Release 11.2.0.3.0 - 64bit Production
    PL/SQL Release 11.2.0.3.0 - Production
    CORE 11.2.0.3.0 Production
    TNS for Linux: Version 11.2.0.3.0 - Production
    NLSRTL Version 11.2.0.3.0 - Production
    SQL> select * from dba_registry;
    COMP_ID COMP_NAME VERSION STATUS MODIFIED NAMESPACE CONTROL SCHEMA PROCEDURE STARTUP PARENT_ID OTHER_SCHEMAS
    CATALOG Oracle Database Catalog Views 11.2.0.3.0 VALID 30-SEP-2012 02:07:19 SERVER SYS SYS DBMS_REGISTRY_SYS.VALIDATE_CATALOG
    CATPROC Oracle Database Packages and Types 11.2.0.3.0 VALID 30-SEP-2012 02:07:19 SERVER SYS SYS DBMS_REGISTRY_SYS.VALIDATE_CATPROC APPQOSSYS,DBSNMP,DIP,ORACLE_OCM,OUTLN,SYSTEM
    OWM Oracle Workspace Manager 11.2.0.3.0 VALID 30-SEP-2012 02:07:19 SERVER SYS WMSYS VALIDATE_OWM
    XDB Oracle XML Database 11.2.0.3.0 VALID 30-SEP-2012 02:07:19 SERVER SYS XDB DBMS_REGXDB.VALIDATEXDB
    DGMGRL> connect sys/password
    Connected.
    DGMGRL> show configuration verbose;
    Configuration - work_DataGuardConfig
    Protection Mode: MaxAvailability
    Databases:
    primary - Primary database
    physical1 - Physical standby database
    physical1 - Physical standby database
    Properties:
    FastStartFailoverThreshold = '30'
    OperationTimeout = '30'
    FastStartFailoverLagLimit = '30'
    CommunicationTimeout = '180'
    FastStartFailoverAutoReinstate = 'TRUE'
    FastStartFailoverPmyShutdown = 'TRUE'
    BystandersFollowRoleChange = 'ALL'
    Fast-Start Failover: DISABLED
    Configuration Status:
    SUCCESS
    $ rpm -qa
    kernel-2.6.32-279.5.2.el6.x86_64
    system-config-firewall-tui-1.2.27-5.el6.noarch
    poppler-data-0.4.0-1.el6.noarch
    mesa-dri-drivers-7.11-5.el6.x86_64
    ghostscript-fonts-5.50-23.1.el6.noarch
    libxml2-python-2.7.6-8.0.1.el6_3.3.x86_64
    PyGreSQL-3.8.1-2.el6.x86_64
    perl-Time-HiRes-1.9721-127.el6.x86_64
    glibc-2.12-1.80.el6_3.5.i686
    kernel-2.6.32-279.9.1.el6.x86_64
    biosdevname-0.3.11-1.el6.x86_64
    device-mapper-1.02.74-10.el6.x86_64
    strace-4.5.19-1.11.el6_3.2.x86_64
    aic94xx-firmware-30-2.el6.noarch
    cpuspeed-1.5-15.el6.x86_64
    matahari-network-0.6.0-14.el6.x86_64
    rhino-1.7-0.7.r2.2.el6.noarch
    elinks-0.12-0.20.pre5.el6.x86_64
    libICE-1.0.6-1.el6.x86_64
    lvm2-libs-2.02.95-10.el6.x86_64
    perl-Crypt-SSLeay-0.57-16.el6.x86_64
    libtar-1.2.11-17.el6.x86_64
    perl-XML-Twig-3.34-1.el6.noarch
    libidn-1.18-2.el6.x86_64
    libreport-plugin-logger-2.0.9-5.0.1.el6.x86_64
    crda-1.1.1_2010.11.22-1.el6.x86_64
    lua-5.1.4-4.1.el6.x86_64
    gnutls-2.8.5-4.el6_2.2.x86_64
    yp-tools-2.9-12.el6.x86_64
    attr-2.4.44-7.el6.x86_64
    libtirpc-0.2.1-5.el6.x86_64
    file-5.04-13.el6.x86_64
    pax-3.4-10.1.el6.x86_64
    zip-3.0-1.el6.x86_64
    dash-0.5.5.1-3.1.el6.x86_64
    latrace-0.5.9-2.el6.x86_64
    kexec-tools-2.0.3-3.0.1.el6.x86_64
    libasyncns-0.8-1.1.el6.x86_64
    libertas-usb8388-firmware-5.110.22.p23-3.1.el6.noarch
    nss-softokn-3.12.9-11.el6.x86_64
    dbus-python-0.83.0-6.1.el6.x86_64
    ql2200-firmware-2.02.08-3.1.el6.noarch
    avahi-libs-0.6.25-11.el6.x86_64
    nfs-utils-lib-1.1.5-4.el6.x86_64
    redhat-indexhtml-6-1.0.2.el6.noarch
    boost-regex-1.41.0-11.0.1.el6_1.2.x86_64
    rpm-python-4.8.0-27.el6.x86_64
    slang-2.2.1-1.el6.x86_64
    perl-core-5.10.1-127.el6.x86_64
    libselinux-2.0.94-5.3.el6.x86_64
    iptables-ipv6-1.4.7-5.1.el6_2.x86_64
    audit-libs-2.2-2.el6.x86_64
    tcpdump-4.0.0-3.20090921gitdf3cb4.2.el6.x86_64
    keyutils-libs-1.4-4.el6.x86_64
    crash-6.0.4-2.el6.x86_64
    python-setuptools-0.6.10-3.el6.noarch
    perl-libs-5.10.1-127.el6.x86_64
    lsof-4.82-4.el6.x86_64
    perl-Module-Load-Conditional-0.30-127.el6.x86_64
    libusb1-1.0.9-0.5.rc1.el6.x86_64
    libunistring-0.9.3-5.el6.x86_64
    rsync-3.0.6-9.el6.x86_64
    libXi-1.3-3.el6.x86_64
    perl-IO-Zlib-1.09-127.el6.x86_64
    perl-HTML-Tagset-3.20-4.el6.noarch
    libXt-1.0.7-1.el6.x86_64
    perl-devel-5.10.1-127.el6.x86_64
    boost-wave-1.41.0-11.0.1.el6_1.2.x86_64
    scli-1.7.3-50.x86_64
    libthai-0.1.12-3.el6.x86_64
    perl-Compress-Raw-Bzip2-2.020-127.el6.x86_64
    mpfr-2.4.1-6.el6.x86_64
    foomatic-db-ppds-4.0-7.20091126.el6.noarch
    eggdbus-0.6-3.el6.x86_64
    libXxf86misc-1.0.2-1.el6.x86_64
    libvisual-0.4.0-9.1.el6.x86_64
    mysql-libs-5.1.61-4.el6.x86_64
    libnih-1.0.1-7.el6.x86_64
    oracle-rdbms-server-11gR2-preinstall-1.0-6.el6.x86_64
    hal-0.5.14-11.el6.x86_64
    libgcrypt-1.4.5-9.el6_2.2.x86_64
    boost-test-1.41.0-11.0.1.el6_1.2.x86_64
    glibc-common-2.12-1.80.el6_3.5.x86_64
    mysql-5.1.61-4.el6.x86_64
    ncurses-5.7-3.20090208.el6.x86_64
    python-qpid-0.14-11.el6_3.noarch
    qpid-qmf-0.14-14.0.1.el6_3.x86_64
    matahari-lib-0.6.0-14.el6.x86_64
    oracle-logos-60.0.11-9.el6.noarch
    perl-Module-Build-0.3500-127.el6.x86_64
    libhugetlbfs-utils-2.12-2.el6.x86_64
    fontpackages-filesystem-1.41-1.1.el6.noarch
    perl-Parse-CPAN-Meta-1.40-127.el6.x86_64
    openswan-2.6.32-19.el6_3.x86_64
    ncurses-libs-5.7-3.20090208.el6.x86_64
    e2fsprogs-libs-1.41.12-12.el6.x86_64
    dracut-004-284.0.1.el6_3.1.noarch
    ConsoleKit-libs-0.4.1-3.el6.x86_64
    udev-147-2.42.el6.x86_64
    bind-utils-9.8.2-0.10.rc1.el6_3.4.x86_64
    iwl5150-firmware-8.24.2.2-1.el6.noarch
    unixODBC-devel-2.2.14-11.el6.x86_64
    quota-3.17-16.el6.x86_64
    xdg-utils-1.0.2-17.20091016cvs.el6.noarch
    matahari-broker-0.6.0-14.el6.x86_64
    mingetty-1.08-5.el6.x86_64
    samba-common-3.5.10-125.el6.x86_64
    usermode-1.102-3.el6.x86_64
    abrt-addon-ccpp-2.0.8-6.0.1.el6.x86_64
    perl-XML-Dumper-0.81-6.el6.noarch
    libdhash-0.4.2-9.el6.x86_64
    crontabs-1.10-33.el6.noarch
    libevent-1.4.13-4.el6.x86_64
    mtr-0.75-5.el6.x86_64
    atk-1.28.0-2.el6.x86_64
    sgpio-1.2.0.10-5.el6.x86_64
    rdate-1.4-16.el6.x86_64
    boost-system-1.41.0-11.0.1.el6_1.2.x86_64
    latencytop-common-0.5-9.el6.x86_64
    libsemanage-2.0.43-4.1.el6.x86_64
    libtopology-0.3-7.el6.x86_64
    libtheora-1.1.0-2.el6.x86_64
    atmel-firmware-1.3-7.el6.noarch
    cryptsetup-luks-1.2.0-7.el6.x86_64
    python-dmidecode-3.10.13-1.el6.x86_64
    ipw2200-firmware-3.1-4.el6.noarch
    m4-1.4.13-5.el6.x86_64
    bfa-firmware-3.0.2.2-1.el6.noarch
    python-iwlib-0.1-1.2.el6.x86_64
    libedit-2.11-4.20080712cvs.1.el6.x86_64
    smartmontools-5.42-2.el6.x86_64
    numpy-1.4.1-9.el6.x86_64
    libcom_err-1.41.12-12.el6.x86_64
    nmap-5.51-2.0.1.el6.x86_64
    python-paramiko-1.7.5-2.1.el6.noarch
    grep-2.6.3-3.el6.x86_64
    tcsh-6.17-19.el6_2.x86_64
    db4-4.7.25-17.el6.x86_64
    db4-utils-4.7.25-17.el6.x86_64
    perl-Params-Check-0.26-127.el6.x86_64
    make-3.81-20.el6.x86_64
    expat-2.0.1-11.el6_2.x86_64
    SDL-1.2.14-3.el6.x86_64
    libXext-1.1-3.el6.x86_64
    freetype-2.3.11-6.el6_2.9.x86_64
    xorg-x11-drv-ati-firmware-6.14.2-9.el6.noarch
    libXft-2.1.13-4.1.el6.x86_64
    perl-Term-UI-0.20-127.el6.x86_64
    perl-XML-Parser-2.36-7.el6.x86_64
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    vim-enhanced-7.2.411-1.8.el6.x86_64
    samba-client-3.5.10-125.el6.x86_64
    openssh-server-5.3p1-81.el6.x86_64
    rsyslog-5.8.10-2.el6.x86_64
    rng-tools-2-13.el6_2.x86_64
    fprintd-pam-0.1-20.git04fd09cfa.el6.x86_64
    sudo-1.7.4p5-13.el6_3.x86_64
    rhn-check-1.0.0-87.0.2.el6.noarch
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    dmidecode-2.11-2.el6_1.x86_64
    libgomp-4.4.6-4.el6.x86_64
    oraclelinux-release-notes-6Server-7.x86_64
    xmlrpc-c-client-1.16.24-1209.1840.el6.x86_64
    selinux-policy-3.7.19-155.0.1.el6_3.4.noarch
    cas-0.15-1.el6.1.noarch
    ca-certificates-2010.63-3.el6_1.5.noarch
    perl-CPAN-1.9402-127.el6.x86_64
    libsndfile-1.0.20-5.el6.x86_64
    cups-1.4.2-48.el6_3.1.x86_64
    MySQL-python-1.2.3-0.3.c1.1.el6.x86_64
    dejavu-fonts-common-2.30-2.el6.noarch
    qt-x11-4.6.2-24.el6.x86_64
    krb5-workstation-1.9-33.el6_3.3.x86_64
    pulseaudio-libs-0.9.21-14.el6_3.x86_64
    dracut-kernel-004-284.0.1.el6_3.1.noarch
    util-linux-ng-2.17.2-12.7.el6.x86_64
    tzdata-java-2012f-1.el6.noarch
    iwl100-firmware-39.31.5.1-1.el6.noarch
    kpartx-0.4.9-56.el6_3.1.x86_64
    mailx-12.4-6.el6.x86_64
    yum-3.2.29-40.0.1.el6.noarch
    acpid-1.0.10-2.1.el6.x86_64
    cyrus-sasl-lib-2.1.23-13.el6.x86_64
    hesiod-3.1.0-19.el6.x86_64
    usbutils-003-4.el6.x86_64
    tcp_wrappers-libs-7.6-57.el6.x86_64
    mdadm-3.2.3-9.el6.x86_64
    xz-libs-4.999.9-0.3.beta.20091007git.el6.x86_64
    abrt-2.0.8-6.0.1.el6.x86_64
    libnl-1.1-14.el6.x86_64
    abrt-tui-2.0.8-6.0.1.el6.x86_64
    unzip-6.0-1.el6.x86_64
    pciutils-libs-3.1.4-11.el6.x86_64
    libini_config-0.6.1-9.el6.x86_64
    powertop-1.11-6.el6.x86_64
    psmisc-22.6-15.el6_0.1.x86_64
    sssd-1.8.0-32.el6.x86_64
    pixman-0.18.4-1.el6_0.1.x86_64
    bridge-utils-1.2-9.el6.x86_64
    boost-filesystem-1.41.0-11.0.1.el6_1.2.x86_64
    dhcp-common-4.1.1-31.P1.0.1.el6_3.1.x86_64
    ustr-1.0.4-9.1.el6.x86_64
    xz-4.999.9-0.3.beta.20091007git.el6.x86_64
    nfs-utils-1.2.3-26.el6.x86_64
    zd1211-firmware-1.4-4.el6.noarch
    checkpolicy-2.0.22-1.el6.x86_64
    matahari-0.6.0-14.el6.x86_64
    rhnlib-2.5.22-12.0.2.el6.noarch
    rootfiles-8.1-6.1.el6.noarch
    libusb-0.1.12-23.el6.x86_64
    parted-2.1-18.el6.x86_64
    gettext-0.17-16.el6.x86_64
    pth-2.0.7-9.3.el6.x86_64
    system-config-network-tui-1.6.0.el6.2-1.0.3.el6.noarch
    python-netaddr-0.7.5-4.el6.noarch
    bash-4.1.2-9.el6_2.x86_64
    man-pages-overrides-6.3.3-1.el6.noarch
    nspr-4.9.1-2.el6_3.x86_64
    grub-0.97-77.0.1.el6.x86_64
    python-crypto-2.0.1-22.el6.x86_64
    sed-4.2.1-10.el6.x86_64
    sysstat-9.0.4-20.el6.x86_64
    rhnsd-4.9.3-2.0.1.el6.x86_64
    perl-Pod-Escapes-1.04-127.el6.x86_64
    numactl-2.0.7-3.el6.x86_64
    boost-1.41.0-11.0.1.el6_1.2.x86_64
    libudev-147-2.42.el6.x86_64
    crash-trace-command-1.0-4.el6.x86_64
    libX11-1.3-2.el6.x86_64
    matahari-core-0.6.0-14.el6.x86_64
    ql2400-firmware-5.06.05-1.el6.noarch
    libXrandr-1.3.0-4.el6.x86_64
    perl-Object-Accessor-0.34-127.el6.x86_64
    perl-libxml-perl-0.08-10.el6.noarch
    nss-softokn-freebl-3.12.9-11.el6.i686
    pycairo-1.8.6-2.1.el6.x86_64
    perl-File-Fetch-0.26-127.el6.x86_64
    ncurses-libs-5.7-3.20090208.el6.i686
    gmp-4.3.1-7.el6_2.2.x86_64
    flac-1.2.1-6.1.el6.x86_64
    ppl-0.10.2-11.el6.x86_64
    python-matplotlib-0.99.1.2-1.el6.x86_64
    qt-4.6.2-24.el6.x86_64
    patch-2.6-6.el6.x86_64
    libXxf86dga-1.1.1-1.el6.x86_64
    kbd-misc-1.15-11.el6.noarch
    procps-3.2.8-23.el6.x86_64
    perl-Date-Manip-6.24-1.el6.noarch
    libdrm-2.4.25-2.el6.x86_64
    libgfortran-4.4.6-4.el6.x86_64
    python-libs-2.6.6-29.el6_3.3.x86_64
    python-krbV-1.0.90-3.el6.x86_64
    gzip-1.3.12-18.el6.x86_64
    dbus-libs-1.2.24-7.0.1.el6_3.x86_64
    nss-sysinit-3.13.5-1.0.1.el6_3.x86_64
    samba-winbind-clients-3.5.10-125.el6.x86_64
    glibc-devel-2.12-1.80.el6_3.5.x86_64
    plymouth-scripts-0.8.3-24.0.1.el6.x86_64
    basesystem-10.0-4.0.1.el6.noarch
    mesa-libGL-7.11-5.el6.x86_64
    postgresql-docs-8.4.13-1.el6_3.x86_64
    poppler-0.12.4-3.el6_0.1.x86_64
    ncurses-base-5.7-3.20090208.el6.x86_64
    perl-parent-0.221-127.el6.x86_64
    kernel-devel-2.6.32-279.5.2.el6.x86_64
    oddjob-mkhomedir-0.30-5.el6.x86_64
    zlib-1.2.3-27.el6.x86_64
    libselinux-utils-2.0.94-5.3.el6.x86_64
    kernel-firmware-2.6.32-279.9.1.el6.noarch
    device-mapper-libs-1.02.74-10.el6.x86_64
    tzdata-2012f-1.el6.noarch
    iwl6000g2a-firmware-17.168.5.3-1.el6.noarch
    libjpeg-6b-46.el6.x86_64
    policycoreutils-2.0.83-19.24.0.1.el6.x86_64
    yum-rhn-plugin-0.9.1-43.0.1.el6.noarch
    gpgme-1.1.8-3.el6.x86_64
    matahari-service-0.6.0-14.el6.x86_64
    libaio-0.3.107-10.el6.x86_64
    pinfo-0.6.9-12.el6.x86_64
    libtalloc-2.0.1-1.1.el6.x86_64
    cryptsetup-luks-libs-1.2.0-7.el6.x86_64
    boost-program-options-1.41.0-11.0.1.el6_1.2.x86_64
    libreport-python-2.0.9-5.0.1.el6.x86_64
    perl-XML-Grove-0.46alpha-40.el6.noarch
    which-2.19-6.el6.x86_64
    libreport-cli-2.0.9-5.0.1.el6.x86_64
    wireless-tools-29-5.1.1.el6.x86_64
    bzip2-1.0.5-7.el6_0.x86_64
    ypbind-1.20.4-29.el6.x86_64
    nano-2.0.9-7.el6.x86_64
    libgssglue-0.1-11.el6.x86_64
    vconfig-1.9-8.1.el6.x86_64
    kernel-2.6.32-279.5.1.el6.x86_64
    b43-fwcutter-012-2.2.el6.x86_64
    libmng-1.0.10-4.1.el6.x86_64
    libffi-3.0.5-3.2.el6.x86_64
    ivtv-firmware-20080701-20.2.noarch
    python-ethtool-0.6-1.el6.x86_64
    iwl3945-firmware-15.32.2.9-4.el6.noarch
    bc-1.06.95-1.el6.x86_64
    words-3.0-17.el6.noarch
    mysql-server-5.1.61-4.el6.x86_64
    python-kerberos-1.1-6.2.el6.x86_64
    rpm-4.8.0-27.el6.x86_64
    libpcap-1.0.0-6.20091201git117cb5.el6.x86_64
    passwd-0.77-4.el6_2.2.x86_64
    chkconfig-1.3.49.3-2.el6.x86_64
    cvs-1.11.23-11.el6_2.1.x86_64
    libuuid-2.17.2-12.7.el6.x86_64
    perl-DBI-1.609-4.el6.x86_64
    at-3.1.10-43.el6_2.1.x86_64
    pygobject2-2.20.0-5.el6.x86_64
    gawk-3.1.7-9.el6.x86_64
    libgudev1-147-2.42.el6.x86_64
    python-nose-0.10.4-3.1.el6.noarch
    perl-Pod-Simple-3.13-127.el6.x86_64
    ntsysv-1.3.49.3-2.el6.x86_64
    perl-Module-Load-0.16-127.el6.x86_64
    trace-cmd-1.0.5-7.el6.x86_64
    theora-tools-1.1.0-2.el6.x86_64
    libtiff-3.9.4-6.el6_3.x86_64
    perl-DBD-SQLite-1.27-3.el6.x86_64
    nfs4-acl-tools-0.3.3-6.el6.x86_64
    libXfixes-4.0.4-1.el6.x86_64
    perl-Compress-Zlib-2.020-127.el6.x86_64
    kernel-devel-2.6.32-279.5.1.el6.x86_64
    qt3-3.3.8b-30.el6.x86_64
    perl-ExtUtils-MakeMaker-6.55-127.el6.x86_64
    boost-graph-1.41.0-11.0.1.el6_1.2.x86_64
    ncurses-devel-5.7-3.20090208.el6.x86_64
    pango-1.28.1-3.el6_0.5.x86_64
    perl-Digest-SHA-5.47-127.el6.x86_64
    gstreamer-0.10.29-1.0.1.el6.x86_64
    libXmu-1.0.5-1.el6.x86_64
    foomatic-db-4.0-7.20091126.el6.noarch
    pam-1.1.1-10.el6_2.1.x86_64
    tcp_wrappers-7.6-57.el6.x86_64
    compat-libstdc++-33-3.2.3-69.el6.x86_64
    gstreamer-plugins-base-0.10.29-1.el6.x86_64
    pinentry-0.7.6-6.el6.x86_64
    elfutils-libelf-devel-0.152-1.el6.x86_64
    iproute-2.6.32-20.el6.x86_64
    boost-signals-1.41.0-11.0.1.el6_1.2.x86_64
    krb5-libs-1.9-33.el6_3.3.x86_64
    atlas-3.8.4-2.el6.x86_64
    cdparanoia-libs-10.2-5.1.el6.x86_64
    postgresql-libs-8.4.13-1.el6_3.x86_64
    redhat-lsb-4.0-3.0.1.el6.x86_64
    sssd-client-1.8.0-32.el6.x86_64
    python-qpid-qmf-0.14-14.0.1.el6_3.x86_64
    seekwatcher-0.12-5.el6.noarch
    libcurl-7.19.7-26.el6_2.4.x86_64
    I want to upgrade my OS from official repository on Primary and Standby Servers. And I have a question:
    Will I have a problem with my RDBMS after upgrade OS (e.g. statuses in dba_registry will become INVALID)?

    It's Ok.
    Now I have:
    $ cat /etc/issue
    Oracle Linux Server release 6.4
    No any problem.

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