Access Denied while trying to delete document

In SharePoint 2013, if the user ONLY has contribute access to a library, (user does not have access to the site) and if the user tries to delete a file, it throws an error message.
Access Denied: You do not have permission to perform this action or access this resource.
permission inheritance is broken on library level, Contribute Permission does have these options checked delete files, versions, and view application pages, but can not delete file.
If read access is provided to the site level, then user can delete file, why is that ?
using SharePoint 2013 Standard Edition.

Does the user get the error both from the ribbon and from the "...", "..." menu?
If a user has the Delete Items permission, but not the Use Remote Interfaces permission then they can delete files from the ribbon, but when attempting to delete from the content dropdown (Edit Control Block) will get Access Denied.
I'd like to try to duplicate your problem...
Is versioning enabled? Major or major and minor versions?
Is this consistent with all document types? .txt, pdf, docx, etc.
Is the file in a Document Set?
Is there a workflow running on the documents?
Is the document assigned to a custom Content Type?
Any other settings?
Mike Smith TechTrainingNotes.blogspot.com
Books:
SharePoint 2007 2010 Customization for the Site Owner,
SharePoint 2010 Security for the Site Owner

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