AE Not Rendering when minimized

So i usually need to have AE render projects overnight but lately there has been this thing where my computer keeps asking me to UPDATE something and it just keeps popping up and whenever i write my admin password and click yes it just appears another 30 minutes later over and over again and of course whenever this happens the windows comes up and makes it the focused window
This stops my AE from rendering,i notice this happening whenever I'm rendering a smaller project and i click off AE to look at some stuff on google chrome and come back to see having nothing rendered at all
How do i have AE render while its minimized?? It's really messing with my work flow

also it seems to be only the transitions.... thats so wiered. .

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