Archiving/Backing up messages in Mail

I know that so long as you save pref files and mail boxes etc one can be confident the data is saved and accessible. The problem with this is that if you wish to search for some email in the "archive" it means reverting Mail.app to that point in time when the back-up was made. It rather messes up the "up-to-date" set-up of Mail!
I would like to have a way of storing my emails for posterity in a form I can access without having to disturb Mail. My best solution so far is iData2 which will import Mail's emails and store them in a data base. Works quite well actually but its sorting can't handle threading etc.
Ideally I want an app that can look at Mail's mbox folders and handle them, sort, display etc just like Mail does. I want to be able to say "open zxzx.mbox" and look/read/search the emails contained in zxzx.mbox.
I also would feel better if the format used is pretty basic/simple so that software in ten years time wont have trouble accessing the data!
Any suggestions?
(There has to be a way! do folk not want to keep their mail even if its years old?)

David G.G.
well like "most of you" that is exactly what I do, to organise my emails.
Kevin Horn,
Thanks for the suggestions but I use POP email, not dot mac (or similar). To check and read email I download all emails from my ISP mail server. My email is stored on my computer not a remote server.
I am an active member of an email based forum which results in large quantities of mail over time, and as I work from home my work emails mount up very quickly. I currently try and keep about 2 months worth of mail in my active mail boxes (as in, the ones that email downloads to), transferring older stuff to "archive email" type mail boxes from time to time. having too much mail in the Inbox results in Mail "slow-downs". keeping a couple of years worth of mail, even when sorted out into separate mail boxes results in very sluggish searches and can be frustrating when just searching for a recent email last week. (yes I know I could filter by date etc)
I would like to store older emails either on cd/dvd or external drive (or both),
(and backing up data is, as you know, vital) but be able to access those emails without having to mess-up Mail.
We all know how quickly our hard disks get full and my 80GB internal drive needs some free space. I don't see the point of storing such stuff permanently on my "working drive". Some of my Mail dates back 6 years or more and all in all is now occupying quite a few GB of disk space - even more than my pics in iPhoto!
So as I said I'd like to back up my mail to some disk, but still be able to access it in a Mail.app like manner if I need to. I just don't want to have to bring it all back into the Library folder etc. and mess up the current state of Mail.
I'm wondering if there is something I can do with aliases... make an alias of an Mbox from a DVD and place in the appropriate place in Library->mail folder. Launch Mail and access the mail box. once done, delete that mail box. Its not ideal though and a bit of a faff, even if this would work.
Any other suggestions or comments?

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