Can't download updates from either Software Update or Apple Downloads

The update (whether of iTunes 8.2, Security Update 2009-002, or QuickTime) appears to be downloading completely but then I get a red exclamation mark, an "unspecified error" message, and a failure to install. I've run Disk Repair from Install disk, which says disk is fine, and have run extended Hardware Test from Install disk, which says computer is fine. Does anyone else have this problem? Please help! Thanks. -Elroc

*" When I went into Preferences, though, I noticed nearly twenty empty folders with nonsense names like v0ê)∂øˇ‘–†(A. Could that reflect a problem somewhere?"*
Yes it could. Delete any files like that. They could be old preference files from software you don't use anymore. Delete them and restart your Mac.
Don't see the Genius Bar just yet.
Check the hard disk for errors. I know you said you did this but make sure just in case.
Insert the installer disk and Restart, holding down the "C" key until grey Apple appears.
Go to Installer menu (Panther and earlier) or Utilities menu (Tiger and later) and launch Disk Utility.
Select your HDD (manufacturer ID) in the left panel.
Select First Aid in the Main panel.
(Check S.M.A.R.T Status of HDD at the bottom of right panel. It should say: Verified)
Click Repair Disk on the bottom right.
If DU reports disk does not need repairs quit DU and restart.
If DU reports errors Repair again and again until DU reports disk is repaired.
When you are finished with DU, from the Menu Bar, select Utilities/Startup Manager.
Select your start up disk and click Restart
If the hard disk appears to be ok... see if you can download and install the 10.4.11 combo update which contains fixes for 10.5.1 up to 10.4.11 available here.
http://www.apple.com/downloads/macosx/apple/macosx_updates/macosx10411comboupdat eintel.html
If that doesn't work, if it were me, I'd back up my important data and try and Archive and Install.
Instructions here. http://support.apple.com/kb/HT1710 This does NOT erase the hard disk but restores your system software.

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