CompressorTranscoder only using 200% and "not responding"

I'm new to Compressor and am using it to convert a very large batch of video files. All is well--the conversions are successful--and yet Activity Monitor shows CompressorTranscoder never going over 200% CPU usage, and I'm on a quad-core (single-processor) Mac Pro. Also, CompressorTranscoder is listed as "not responding." I saw other threads about that, but I wasn't sure if my situation was exactly the same, or what to make of it.
So, my questions: is there a setting I should change so that Compressor will use all four cores? Is the red "not responding" message in Activity Monitor cause for concern? Do you have any other tips for getting Compressor to work as fast as possible?
Thanks in advance.
Ben

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CompressorTranscoder only using 200% and "not responding"

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