Entire song library won't sync to iphone

my entire song library won't sync to my iphone.  some songs in my library are just skipped over and never play.  What's the problem?

It sounds to me like the option to  "copy files to iTunes Music folder when adding to library" was turned off in the iTunes -> Advanced preferences when you added the tracks from the flash drive, so iTunes left them on the flash drive rather than copying them to your computer's hard drive. Get Info on any of the tracks and see where iTunes thinks they should be located. If they're pointing to the flash drive, check that preference.
If that is indeed the problem, you'll need to fix the location. You can do this track by track if there aren't too many, but if there are a number of them, it'll be easiest to remove them from the iTunes library, fix the above-mentioned preference, and add the tracks again. Or you can just keep the flash drive connected to your computer, but that's probably not ideal.
Regards.

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