Error with JAVA_HOME enviro variable

I'm running win2k Pro. I installed first j2sdk1.4.1 and then tomcat 4.1.12 on my e:\. When I click START TOMCAT i recieve the error in a dialog box:
Cannot find the file '-Djava.endorsed.dirs='(or one of its components). Make sure the path and filename are correct and that all required libraries are available
Also in the command prompt it describes the error as:
The JAVA_HOME environment variable is not defined
This environment variable is need to run this program
Using CATALINA_BASE: ..
Using CATALINA_HOME: ..
Using CATALINA_TMPDIR: ..\temp
Using JAVA_HOME:
I've set my environment variables as the following
JAVA_HOME - e:\j2sdk1.4.1
CATALINA_HOME - e:\Tomcat
CLASSPATH - e:\Tomcat\common\lib\servlet.jar
PATH - c:\WINNT;c:\WINNT\SYSTEM32\cmd;e:\j2sdk1.4.1

I have exactly the same problem with the environment variables.
I am running Win Me;
I have all the environment variables set in AUTOEXEC.BAT, including the PATH ; but after many tests I am convinced that autoexec.bat is not being run at all;
I tried adding an auto batch command file to be run every time a dos box was opened but while that runs ok it still leaves the problem outstanding;
ie startup wont run through, claiming that the environment variables are not set:
This is what I have set in autoexec.bat
set PATH=C:\Java\j2sdk1.4.1_02\bin;C:\orawin95\bin;C:\WINDOWS;C:\WINDOWS\COMMAND
SET JAVA_HOME="C:\Java"
SET CATALINA_HOME="C:\Tomcat\jakarta-tomcat-4.1.24"
ANy help/advice appreciated

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    V [libjvm.so+0x42297c]
    V [libjvm.so+0x42564a]
    V [libjvm.so+0x2b5d08]
    C [libjava.so+0x13714] Java_sun_reflect_NativeMethodAccessorImpl_invoke0+0x34
    j sun.reflect.NativeMethodAccessorImpl.invoke0(Ljava/lang/reflect/Method;Ljava/lang/Object;[Ljava/lang/Object;)Ljava/lang/Object;+0
    j sun.reflect.NativeMethodAccessorImpl.invoke(Ljava/lang/Object;[Ljava/lang/Object;)Ljava/lang/Object;+87
    j sun.reflect.DelegatingMethodAccessorImpl.invoke(Ljava/lang/Object;[Ljava/lang/Object;)Ljava/lang/Object;+6
    j java.lang.reflect.Method.invoke(Ljava/lang/Object;[Ljava/lang/Object;)Ljava/lang/Object;+111
    j sun.rmi.server.UnicastServerRef.dispatch(Ljava/rmi/Remote;Ljava/rmi/server/RemoteCall;)V+246
    j sun.rmi.transport.Transport$1.run()Ljava/lang/Object;+23
    v ~StubRoutines::call_stub
    V [libjvm.so+0x24e6dc]
    V [libjvm.so+0x3df698]
    V [libjvm.so+0x24e50f]
    V [libjvm.so+0x2a42eb]
    C [libjava.so+0x93bc] Java_java_security_AccessController_doPrivileged__Ljava_security_PrivilegedExceptionAction_2Ljava_security_AccessControlContext_2+0x3c
    j java.security.AccessController.doPrivileged(Ljava/security/PrivilegedExceptionAction;Ljava/security/AccessControlContext;)Ljava/lang/Object;+0
    j sun.rmi.transport.Transport.serviceCall(Ljava/rmi/server/RemoteCall;)Z+163
    j sun.rmi.transport.tcp.TCPTransport.handleMessages(Lsun/rmi/transport/Connection;Z)V+185
    j sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run()V+685
    j java.lang.Thread.run()V+11
    v ~StubRoutines::call_stub
    V [libjvm.so+0x24e6dc]
    V [libjvm.so+0x3df698]
    V [libjvm.so+0x24df35]
    V [libjvm.so+0x24dfce]
    V [libjvm.so+0x2b88c5]
    V [libjvm.so+0x46f1cd]
    V [libjvm.so+0x3e01a8]
    C [libpthread.so.0+0x5e51]
    Java frames: (J=compiled Java code, j=interpreted, Vv=VM code)
    j com.lt.rcf.DRCFJNI.RcfApi_saveCorpus(J)Z+0
    j com.lt.rcf.RcfApi.saveCorpus()Z+4
    j com.lt.rcf.RcfServer.saveCorpus()Z+4
    v ~StubRoutines::call_stub
    j sun.reflect.NativeMethodAccessorImpl.invoke0(Ljava/lang/reflect/Method;Ljava/lang/Object;[Ljava/lang/Object;)Ljava/lang/Object;+0
    j sun.reflect.NativeMethodAccessorImpl.invoke(Ljava/lang/Object;[Ljava/lang/Object;)Ljava/lang/Object;+87
    j sun.reflect.DelegatingMethodAccessorImpl.invoke(Ljava/lang/Object;[Ljava/lang/Object;)Ljava/lang/Object;+6
    j java.lang.reflect.Method.invoke(Ljava/lang/Object;[Ljava/lang/Object;)Ljava/lang/Object;+111
    j sun.rmi.server.UnicastServerRef.dispatch(Ljava/rmi/Remote;Ljava/rmi/server/RemoteCall;)V+246
    j sun.rmi.transport.Transport$1.run()Ljava/lang/Object;+23
    v ~StubRoutines::call_stub
    j java.security.AccessController.doPrivileged(Ljava/security/PrivilegedExceptionAction;Ljava/security/AccessControlContext;)Ljava/lang/Object;+0
    j sun.rmi.transport.Transport.serviceCall(Ljava/rmi/server/RemoteCall;)Z+163
    j sun.rmi.transport.tcp.TCPTransport.handleMessages(Lsun/rmi/transport/Connection;Z)V+185
    j sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run()V+685
    j java.lang.Thread.run()V+11
    v ~StubRoutines::call_stub
    --------------- P R O C E S S ---------------
    Java Threads: ( => current thread )
    =>0x0805ae78 JavaThread "RMI TCP Connection(2)-64.50.99.85" daemon [_thread_in_native, id=854]
    0x69a02810 JavaThread "DestroyJavaVM" [_thread_blocked, id=799]
    0x081e8778 JavaThread "RMI LeaseChecker" daemon [_thread_blocked, id=820]
    0x08139810 JavaThread "GC Daemon" daemon [_thread_blocked, id=816]
    0x08138ce8 JavaThread "RMI Reaper" [_thread_blocked, id=815]
    0x08138628 JavaThread "Timer-0" daemon [_thread_blocked, id=814]
    0x08127970 JavaThread "RMI TCP Accept-0" daemon [_thread_in_native, id=813]
    0x0810ee58 JavaThread "Low Memory Detector" daemon [_thread_blocked, id=810]
    0x0810d9d8 JavaThread "CompilerThread1" daemon [_thread_blocked, id=809]
    0x0810c9b8 JavaThread "CompilerThread0" daemon [_thread_blocked, id=808]
    0x0810b958 JavaThread "AdapterThread" daemon [_thread_blocked, id=807]
    0x0810aab0 JavaThread "Signal Dispatcher" daemon [_thread_blocked, id=806]
    0x081016a0 JavaThread "Finalizer" daemon [_thread_blocked, id=805]
    0x080ff8d8 JavaThread "Reference Handler" daemon [_thread_blocked, id=804]
    Other Threads:
    0x080fd108 VMThread [id=803]
    0x08110390 WatcherThread [id=811]
    VM state:not at safepoint (normal execution)
    VM Mutex/Monitor currently owned by a thread: None
    Heap
    PSYoungGen total 3584K, used 667K [0x65d00000, 0x66100000, 0x69530000)
    eden space 3072K, 21% used [0x65d00000,0x65da6f60,0x66000000)
    from space 512K, 0% used [0x66000000,0x66000000,0x66080000)
    to space 512K, 0% used [0x66080000,0x66080000,0x66100000)
    PSOldGen total 28800K, used 156K [0x49b30000, 0x4b750000, 0x65d00000)
    object space 28800K, 0% used [0x49b30000,0x49b571a8,0x4b750000)
    PSPermGen total 16384K, used 2968K [0x45b30000, 0x46b30000, 0x49b30000)
    object space 16384K, 18% used [0x45b30000,0x45e16378,0x46b30000)
    Dynamic libraries:
    08048000-08056000 r-xp 00000000 03:07 18410 /usr/local/lib/jdk1.5.0_01/bin/java
    08056000-08058000 rw-p 0000e000 03:07 18410 /usr/local/lib/jdk1.5.0_01/bin/java
    08058000-08232000 rwxp 00000000 00:00 0
    40000000-40016000 r-xp 00000000 03:01 196866 /lib/ld-2.3.2.so
    40016000-40017000 rw-p 00015000 03:01 196866 /lib/ld-2.3.2.so
    40017000-40018000 rw-p 00000000 00:00 0
    40018000-40019000 r--p 00000000 00:00 0
    40019000-4001f000 r-xp 00000000 03:07 305931 /usr/local/lib/jdk1.5.0_01/jre/lib/i386/native_threads/libhpi.so
    4001f000-40020000 rw-p 00006000 03:07 305931 /usr/local/lib/jdk1.5.0_01/jre/lib/i386/native_threads/libhpi.so
    40020000-4002d000 r-xp 00000000 03:01 197024 /lib/libpthread-0.10.so
    4002d000-4002f000 rw-p 0000c000 03:01 197024 /lib/libpthread-0.10.so
    4002f000-40071000 rw-p 00000000 00:00 0
    40071000-40073000 r-xp 00000000 03:01 196982 /lib/libdl-2.3.2.so
    40073000-40074000 rw-p 00002000 03:01 196982 /lib/libdl-2.3.2.so
    40074000-40075000 rw-p 00000000 00:00 0
    40075000-4019d000 r-xp 00000000 03:01 196978 /lib/libc-2.3.2.so
    4019d000-401a5000 rw-p 00127000 03:01 196978 /lib/libc-2.3.2.so
    401a5000-401a8000 rw-p 00000000 00:00 0
    401a8000-4069b000 r-xp 00000000 03:07 193481 /usr/local/lib/jdk1.5.0_01/jre/lib/i386/server/libjvm.so
    4069b000-406fd000 rw-p 004f2000 03:07 193481 /usr/local/lib/jdk1.5.0_01/jre/lib/i386/server/libjvm.so
    406fd000-40b13000 rw-p 00000000 00:00 0
    40b13000-40b34000 r-xp 00000000 03:01 196997 /lib/libm-2.3.2.so
    40b34000-40b35000 rw-p 00020000 03:01 196997 /lib/libm-2.3.2.so
    40b35000-40b3d000 rw-s 00000000 03:06 179171 /tmp/hsperfdata_pradeep/799
    40b3d000-40b4f000 r-xp 00000000 03:01 197009 /lib/libnsl-2.3.2.so
    40b4f000-40b50000 rw-p 00011000 03:01 197009 /lib/libnsl-2.3.2.so
    40b50000-40b52000 rw-p 00000000 00:00 0
    40b52000-40b59000 r-xp 00000000 03:01 197011 /lib/libnss_compat-2.3.2.so
    40b59000-40b5a000 rw-p 00006000 03:01 197011 /lib/libnss_compat-2.3.2.so
    40b5a000-40b62000 r-xp 00000000 03:01 197016 /lib/libnss_nis-2.3.2.so
    40b62000-40b63000 rw-p 00007000 03:01 197016 /lib/libnss_nis-2.3.2.so
    40b63000-40b6b000 r-xp 00000000 03:01 197014 /lib/libnss_files-2.3.2.so
    40b6b000-40b6c000 rw-p 00008000 03:01 197014 /lib/libnss_files-2.3.2.so
    40b6c000-40b77000 r-xp 00000000 03:07 305935 /usr/local/lib/jdk1.5.0_01/jre/lib/i386/libverify.so
    40b77000-40b78000 rw-p 0000b000 03:07 305935 /usr/local/lib/jdk1.5.0_01/jre/lib/i386/libverify.so
    40b78000-40b99000 r-xp 00000000 03:07 305936 /usr/local/lib/jdk1.5.0_01/jre/lib/i386/libjava.so
    40b99000-40b9b000 rw-p 00020000 03:07 305936 /usr/local/lib/jdk1.5.0_01/jre/lib/i386/libjava.so
    40b9b000-40bae000 r-xp 00000000 03:07 305938 /usr/local/lib/jdk1.5.0_01/jre/lib/i386/libzip.so
    40bae000-40bb0000 rw-p 00012000 03:07 305938 /usr/local/lib/jdk1.5.0_01/jre/lib/i386/libzip.so
    40bb0000-43171000 r--s 00000000 03:07 306574 /usr/local/lib/jdk1.5.0_01/jre/lib/rt.jar
    43171000-431d9000 rw-p 00000000 00:00 0
    431d9000-43260000 r--s 00000000 03:07 306155 /usr/local/lib/jdk1.5.0_01/jre/lib/jsse.jar
    43260000-43274000 r--s 00000000 03:07 305969 /usr/local/lib/jdk1.5.0_01/jre/lib/jce.jar
    43274000-43aaf000 r--s 00000000 03:07 306402 /usr/local/lib/jdk1.5.0_01/jre/lib/charsets.jar
    43aaf000-45b2f000 rwxp 00028000 00:00 0
    45b30000-6974f000 rwxp 030a9000 00:00 0
    6974f000-69775000 r--s 00000000 03:07 80989 /usr/local/lib/jdk1.5.0_01/jre/lib/ext/sunjce_provider.jar
    69775000-697a0000 r--s 00000000 03:07 80991 /usr/local/lib/jdk1.5.0_01/jre/lib/ext/sunpkcs11.jar
    697a0000-697a2000 r--s 00000000 03:07 81394 /usr/local/lib/jdk1.5.0_01/jre/lib/ext/dnsns.jar
    697a2000-69866000 r--s 00000000 03:07 82743 /usr/local/lib/jdk1.5.0_01/jre/lib/ext/localedata.jar69866000-698be000 r-xp 00000000 03:08 3489986 /home/pradeep/bin/libDRCF.so
    698be000-698c9000 rw-p 00057000 03:08 3489986 /home/pradeep/bin/libDRCF.so
    698c9000-698ca000 r-xp 00000000 03:07 305957 /usr/local/lib/jdk1.5.0_01/jre/lib/i386/librmi.so
    698ca000-698cb000 rw-p 00000000 03:07 305957 /usr/local/lib/jdk1.5.0_01/jre/lib/i386/librmi.so
    698cb000-698cc000 rw-p 00000000 00:00 0
    698d1000-69970000 r-xp 00000000 03:07 499162 /usr/lib/libstdc++.so.5.0.7
    69970000-69986000 rw-p 0009e000 03:07 499162 /usr/lib/libstdc++.so.5.0.7
    69986000-6998b000 rw-p 00000000 00:00 0
    6998b000-69993000 r-xp 00000000 03:01 195462 /lib/libgcc_s.so.1
    69993000-69994000 rw-p 00007000 03:01 195462 /lib/libgcc_s.so.1
    69994000-699b5000 r--s 00000000 03:07 435887 /usr/share/java/jaxp-1.2.jar
    699b5000-699c9000 r-xp 00000000 03:07 305941 /usr/local/lib/jdk1.5.0_01/jre/lib/i386/libnet.so
    699c9000-699ca000 rw-p 00013000 03:07 305941 /usr/local/lib/jdk1.5.0_01/jre/lib/i386/libnet.so
    69a00000-69a4a000 rw-p 0006c000 00:00 0
    69a4a000-69b00000 ---p 0008d000 00:00 0
    69b00000-69c28000 r--s 00000000 03:07 434814 /usr/share/java/xercesImpl.jar
    bd601000-bd604000 ---p 00003000 00:00 0
    bd604000-bd800000 rwxp 00006000 00:00 0
    bd801000-bd804000 ---p 00003000 00:00 0
    bd804000-bda00000 rwxp 00006000 00:00 0
    bda01000-bda04000 ---p 00003000 00:00 0
    bda04000-bdc00000 rwxp 00006000 00:00 0
    bdc01000-bdc04000 ---p 00003000 00:00 0
    bdc04000-bde00000 rwxp 00006000 00:00 0
    bde01000-bde04000 ---p 00003000 00:00 0
    bde04000-be000000 rwxp 00006000 00:00 0
    be001000-be004000 ---p 00003000 00:00 0
    be004000-be200000 rwxp 00006000 00:00 0
    be200000-be201000 ---p 00000000 00:00 0
    be201000-be400000 rwxp 00001000 00:00 0
    be401000-be404000 ---p 00003000 00:00 0
    be404000-be600000 rwxp 00006000 00:00 0
    be600000-be604000 ---p 00000000 00:00 0
    be604000-be800000 rwxp 00004000 00:00 0
    be800000-be804000 ---p 00000000 00:00 0
    be804000-bea00000 rwxp 00004000 00:00 0
    bea00000-bea04000 ---p 00000000 00:00 0
    bea04000-bec00000 rwxp 00004000 00:00 0
    bec01000-bec04000 ---p 00003000 00:00 0
    bec04000-bee00000 rwxp 00006000 00:00 0
    bee01000-bee04000 ---p 00003000 00:00 0
    bee04000-bf000000 rwxp 00006000 00:00 0
    bf001000-bf004000 ---p 00003000 00:00 0
    bf004000-bf200000 rwxp 00006000 00:00 0
    bf200000-bf201000 ---p 00000000 00:00 0
    bf201000-bf400000 rwxp 00001000 00:00 0
    bf400000-bf401000 ---p 00000000 00:00 0
    bf401000-bf600000 rwxp 00001000 00:00 0
    bf600000-bf601000 ---p 00000000 00:00 0
    bf601000-bf800000 rwxp 00001000 00:00 0
    bfe01000-bfe04000 ---p 00000000 00:00 0
    bfe04000-c0000000 rwxp ffe05000 00:00 0
    VM Arguments:
    java_command: com/lt/rcf/RcfServer 64.50.99.85
    Environment Variables:
    JAVA_HOME=/usr/local/lib/jdk
    CLASSPATH=./:/usr/local/lib/jdk/bin/:/home/pradeep/jdom-b10/src/java/:/usr/share/java/xmlParserAPIs.jar:/usr/share/java/xercesImpl.jar:/home/pradeep/DRCF/
    PATH=/usr/local/lib/jdk/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/games
    LD_LIBRARY_PATH=/usr/local/lib/jdk1.5.0_01/jre/lib/i386/server:/usr/local/lib/jdk1.5.0_01/jre/lib/i386:/usr/local/lib/jdk1.5.0_01/jre/../lib/i386:/home/pradeep/bin/
    SHELL=/bin/bash
    DISPLAY=localhost:13.0
    --------------- S Y S T E M ---------------
    OS:3.1
    uname:Linux 2.4.20.kl10 #1 SMP Tue May 6 11:29:07 CDT 2003 i686
    libc:glibc 2.3.2 linuxthreads-0.10 (fixed stack)
    rlimit: STACK 2044k, CORE 0k, NPROC infinity, NOFILE 1024, AS infinity
    load average:2.42 2.15 2.10
    CPU:total 2 family 6, cmov, cx8, fxsr, mmx, sse
    Memory: 4k page, physical 2069724k(271804k free), swap 939792k(923304k free)
    vm_info: Java HotSpot(TM) Server VM (1.5.0_01-b08) for linux-x86, built on Dec 6 2004 19:33:50 by java_re with gcc 3.2.1-7a (J2SE release)

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    Noam

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