Export to PDF in CS4 does not include TrueType glyphs

I created a Indesign CS4 document with Times (a Mac OS system font), inserted some glyphs such as 1/2 or 1/4, and exported it as a PDF. The glyphs however are not rendered properly - they appear as boxes.
If I print the file to my printer or print to a PDF, the qlyphs are included. Opentype fonts seem to be OK. I've also confirmed in Acrobat, that I can use the touch up tool to add the glyphs again, but clearly, this is not a desirable solution. This is not a problem in either Illustrator or Photoshop. This is also not a problem with Indesign CS3 which I still have on my system.
I think this started just after the Indesign Update 6.0.1 update, though I can't be certain.
Any ideas?

Same problem - but thanks for the idea. It's curious that when I use the touch text tool to change the properties, Acrobat "knows" the correct characters. I can select the characters, change the font, change it back to the original font and all is OK. I though Acrobat used some Illustrator libraries to do the touch up, but i I open the PDF in Illustrator, the bad characters get rendered as object - not text.
I guess it's time find a way to easily avoid the dfonts. Problem is dfonts show up as TrueType in the font selection menu. The only way I know to see for sure that it is a dfont is to look at its extension in finder.
I'm not real keen on using dfonts - I was archiving some old InDesign files as PDFs when I ran across the problem. It's kind of a pain to have to chase the font types/conversions through so many layers. Sigh.

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