FQDN Query when publishing the Lync 2010 Topology

Hello All
While am Defining  the Topology for Lync 2010 Enterprise Edition , in which the define of  SQL store , i forgot to mention the FQDN of SQL server name, instead i was mentioned only server name. my sql server FDQN is SQL.doitnow.com
Define a new sql Store 
SQL Server FQDN : SQL
instead of SQL.doitnow.com
SQL instance : RTC
Topology published successfully .
is there any issue will come in future without mentioning of FQDN during the initialization of lync 2010?
After published the topology, all the data stored in central management Store and so, how can i modify any of the  data's after it saved to CMS (after Published topology)
can i delete / remove - CMS and re-publish the topology ? is there any harm ?

Thanks Holger 
So i  need to do the below
1. open an existing topology file , by downloading topology from existing deployment from the server  LYNCFE01n.doitnow.com
2.Expand Enterprise Edition Front End Pools
3. Right Click the POOL --> New Server -- FQDN of Second Server  abd Primary IP address
4. Loging to the second FE server and install the Prequesties
4.Run the Deployment wizzard on your new Server.
5.Install the certificate
6.Start the service
if i need load balance then need the below ,
Configure the load balancer for th web services 
Configure the required DNS entries.
Could you please correct me if am i missing anything 

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