H264 to ProRes problems

Here's my current situation: I have 100Gb of material on h264, shot using a Canon 5dM2 camera. I want it converted to ProRes so I can do post work. If I do this convertion using Compressor, from h264 directly to ProRes, I get heavily altered images. By heavily I mean a 3 to 5% change in luminance (dark images).
If, however, I convert a h264 clip to an Uncompressed 10-bit clip, then take the uncompressed clip and convert it to ProRes, I get a perfect copy.
This poses a bit of a problem, for converting 100Gb of 1920x1280 30fps video to Uncompressed takes a LOT of time and disk space, and I'm supposed to keep shooting with this camera.
Anyone here had to deal with this before?

This is a known issue, of sorts - users report it, but Apple hasn't acknowledged it - and, yes, something in the translation between ProRes and h.264 produces the gamma shift that you're seeing.
Any luck converting those files to Photo-JPEG instead? If you set the Quality slider to 80, or even 75, percent, you shouldn't see any quality drop from your h.264 masters and the file size should be more reasonable than Uncompressed. You can then use those Photo-JPEG files to produce the needed ProRes files.
Outside of that, I've got nothing.

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