How can I fix incorrect connections caused by duplicate file names?

I have many slides, scanned over the past 10 years, with duplicate file names and filed by date. I converted my Elements 9 from PC to iMac and many incorrect connections occured. Is there a way I can correct these connection errors? This problem involves about 5% of my 25,000 photo files.

Duplicate file names don't mean duplicate files for the Organizer, there are other criteria like folder location, pixel size, date taken.
I assume you are using the catalog conversion process in the organizer : do you get a message saying some files are already in the catalog?
Did you use the recommended way for the migration from PC to Mac?
http://helpx.adobe.com/photoshop-elements/kb/backup-restore-move-catalog-photoshop.html
Edit,
Also, with PSE11 and PSE12, many users think that people tags and pictures are not imported because they don't use the new categories panels and don't see them immediately.

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How can I fix incorrect connections caused by duplicate file names?

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