How does Mail 4 organize folders for IMAP vs POP in sidebar?

Can someone explain how Mail organizes the sidebar for POP vs IMAP and what would happen if I switched totatlly to IMAP?
I'm a bit confused by how Mail is organizing the folders in the sidebar for an IMAP account. Way back in Panther days I had an IMAP mac.com email for a year or two and if I recall correctly I saved it in On My Mac as a folder. Same for a POP account I was getting rid of.
Since then I have had only POP accounts (including a gmail account). I managed to keep the inboxes (at least) in sync by not removing mail from the server so that my ipod, iphone, and other Macs can log into the mail server too. This has worked OK. However, since I send a lot of mail from my iPhone, I'm wondering if it's time to switch to IMAP since I will be giving up several ISP issued email addresses that only use POP.
I signed up for a new gmail account recently and it set up as an IMAP account by default. Now there's a folder for the new IMAP Gmail account at the bottom of the sidebar under On My Mac folders. It doesn't have an inbox or sent folder but does have a "sent items" folder.
Additionally, at the top of the sidebar is "Mailboxes" with Inbox, Sent, Drafts, Trash and under these are a subfolder for each POP account and also one for the new IMAP gmail. It seems weird to have the inbox and sent items so far away from the rest of the folders. I'm also not clear if it's keeping 2 copies on my hard disk one in the top mailboxes under "Sent" and one at the bottom Gmail folder under "sent items".
Finally, I'm wondering would it be prudent to back up all of the existing POP mailboxes or move everything to On My Mac before switching some of the other mail accounts over to IMAP? I will want to keep archives of the ISP emails when I cancel my service with them.
Thanks for any clarification and advice.

You Wrote:
This is what Gmail help suggests to set
Drafts:
Store draft messages on the server > do NOT check
Sent:
Store sent messages on the server > do NOT check
Junk:
Store junk messages on the server > checked
Delete junk messages when > Never
Trash:
Move deleted messages to the Trash mailbox > do NOT check
Store deleted messages on the server > do NOT check
These settings in Mail on your Mac or other device is what you want that device to do with these folders. If you want to be able to start a message on an iPhone and finish it on your Mac, then check the setting on the iPhone to store the draft message on the server. Then, it will be available on all other devices set up with the account to finish it. You would need to set each device to the settings you wish. You really don't want to store anything useless like junk mail or trash on the server and take up server space.
You Wrote:
As I understand it, the IMAP keeps a local cache and the servers synced. However, Mail sends email and stores it in the Sent folder and the web interface sends email from the Sent Mail folder. Can't I tell Mail to store outbound mail in Sent Mail?
As I understand it, if you send a message from your IMAP account from Mail on your Mac, it will also copy it to the Sent Items folder in IMAP to be seen from any device. If you delete it from the IMAP Sent Items folder, you won't see it on any other device. It will still be in the Sent Mail on the Mac you sent it from. That is a local folder on that particular device.
The advantage of the IMAP account is that you can control email from multiple devices either locally on them if it is set up with that account or from any browser without having to physically sync all of them together. Like you said, you have to leave the messages on the server to view them on other devices and it also takes up storage on each device.
If you want to store them locally to be saved on one computer, then move or copy them from the IMAP folder to a local folder on that computer.
As Barney suggested, enable the advanced IMAP controls in the Labs section on the gmail website settings. That will give you much more control on what you see in Mail on your Mac.
For example, after enabling this feature, I went  to the Labels section in settings on the website and unchecked all boxes to show in IMAP. the only one left is Inbox which you can't disable. When I go to Mac Mail, I don't see any gmail folders except an Inbox subfolder for gmail, a gmail subfolder for sent, and a gmail subfolder for trash.
I have also checked the box in the Mac account settings on the Trash to move deleted messages to the trash, but not store them on the server. That way, a copy goes to the trash on my Mac and it puts the subfolder in the Mail Trash.
I have also set Mail Preferences in gmail under the Forwarding and POP/IMAP tab to Auto Expunge off and immediately delete messages forever. I did this to keep the gmail site clean and to give all control to my Mac since I never pull it up at the gmail website except when away on vacation.

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