How to run different versions of Apache Tomcat on one machine?

Hi, I am developing a web application. My application runs on Apache Tomcat 5.5.12 and i am using jdk 1.5_03. My application detects files that are automatically scanned to a specific directory and queues them for capture in a database.
The scanner software (HP Toolbox) is also a web application (Unfortunately), it installs itself with Apache Tomcat 4.03. It is "wired" in a specialised way (not the way you would usually deploy web apps). So the Web server is customised by HP (Hewlett-Packard).
The scanner needs this software running inorder to automatically scan to a specified folder. You can only specify local directories to scan to from the Toolbox application
There seems to be some resource conflict when I run my version of Tomcat when the Toolbox application is running (I get an exception
..IllegalMonitorState...current thread not owner). Visa vera is alos true..if i start my application first the Toolbox application won't run.
I tried to install the Toolbox app on another machine and monitor a directory remotely...this doesn't work because you can't read or write to remote files from a servlet or JSP.
I tried loading my application in the web apps directory of Apache 4.03 but it did not detect my application. I don't know how to configure the Tomcat customised by HP.
How can i go about this problem? Is there a way of running two versions of Apache Tomcat on one machine?
Thanks
Parthiv

This is the exception i get when i try to run my version of Apache Tomcat when the Toolbox is running: My application is set to port 80.
Exception in thread "http-80-1" java.lang.IllegalMonitorStateException: current thread not owner
     at java.lang.Object.notifyAll(Native Method)
     at org.apache.tomcat.util.net.AprEndpoint$Worker.run(AprEndpoint.java:1216)
     at java.lang.Thread.run(Unknown Source)

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