IOUG Life Sciences SIG at Oracle OpenWorld 10:45 am - 12:00 pm

Sunday October 22nd! Life Sciences SIG Hilton, Yosemite Room B
Oracle Life Sciences User Group The Oracle Life Sciences User Group (OLSUG) represents a worldwide association of people who share a vested interest in the successful deployment and use of Oracle products within the life sciences industry. This meeting is designed to accelerate the success of users of Oracle products by providing a forum for sharing useful information and best practices, discovering novel and innovative practices, and exposing issues and limitations concerning Oracle products. The meeting will consist of interesting and thought provoking presentations from industry experts and Oracle. Topics will focus on distributed data access, integrating a variety of data types, managing vast quantities of data, and finding patterns and insights. Sign up soon Oracle OpenWorld User group forum on Sunday is quickly filling up!

Sunday October 22nd!

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IOUG Middleware Technologies SIG at Oracle OpenWorld

Hilton, Continental Parlor 3--Sunday October 22nd, featuring Jon Dart Chief Architect for Oracle's Fusion Middleware platform. IOUG Middleware Technologies SIG Meeting Oracle is strategically focusing its energies on the Middleware Technologies, and providing a great level of support for this endeavour. The IOUG has committed to amalgamating the different areas of interest into a new Special Interest Group to provide and share information on the middleware set of technologies. This group was formed early in 2006, and a set of forums has been created in the SIG web site, for users of middleware technologies to share information. Come prepared to see Application Server / FUSION presentations.

Sunday October 22nd!

OpenSource code for accessing Life Science data sources?

We know that many people use Oracle in Life Sciences. Per IDC, Oracle has a 75-80% market share in "Discovery". Oracle would like to help facilitate the exchange of customer code for accessing LS data e.g from GenBank, SwissProt, etc., but Oracle Legal concerns prevent us from posting customer's code on our web site.
Does anyone have any LS code that is based on Oracle that they are willing to share with others on say SourceForge.net? Is there any location where people are already posting this type of Oracle-based open source code?

Please go to SourceForge.net at http://sourceforge.net/projects/oraclelifesci/. Subscribe the mailing list or join the project development. To contribute codes you can chose one of the following:
1. If you would like to use CVS or you need shared development by others, you can use cvs in sourceForge.net to upload your code.
2. email your code to [email protected]
You may also use other facilities that sourceForge has. It only take a couple hours in the beginning to known SourceForge.net.
We welcome codes in all programming langages (Java, Perl, PL/SQL, C, etc) for life science applications on Oracle Platform. Thank you.
Joshua Li , San Diego Supercomputer Center/UCSD

IOUG Application Express (ApEx) SIG Oracle OpenWorld 10:45 am - 12:00 pm

Hilton, Continental Parlor 3 Launching at Oracle OpenWorld! Ari Kaplan will be present to kick off the start-up of this SIG, please join Ari and me (Judi Hotsinpiller IOUG Director of SIGs) at the launch. The SIG will be discussing the creation of the ApEx SIG to augment the technical support efforts of Oracle Corporation and form a virtual community for the ApEx tool users. Tony Jedlinski experienced Ap Ex developer will be at the meeting to discuss the use and development of Application Express. IOUG classes are reaching the full status quickly, sign-up soon!

Sunday October 22nd!

Annual Oracle OpenWorld 2014 User Community Cloud SIG meetup

Each year at Oracle OpenWorld and then at the Collaborate User Conference, the IOUG Cloud SIG invites participation from customers and partners interested or building Clouds using Oracle product technologies. A brief history on the SIG here
Just prior to Oracle OpenWorld 2014 they held this webcast - Marrying the Private Database Cloud and DBaaS of which I understand a replay will be available
For those to made it to Oracle OpenWorld 2014, and were able to attend the meeting Sunday Sept 28th in Moscone South 208, what was of most interest this year? and what future SIG activities are planned in FY15?
ErikB dbasolved basheer.khan

what interest is there from the user community in learning more about openstack? Anyone interested in a hands on lab around the technology? Maybe at C15LV?
Erik

Oracle Life science Data Hub integrated with OBIEE 11g

Hi all,
I have couple of questions from my end,
1. How Oracle Life Science Data Hub can be Integrated with OBIEE 11g.
2. Whether Oracle LSH is a separate software ? if it so kindly provide the link to download the LSH.
Many thanks in advance.
Regards,
Murali

Hi Murali,
I do not know whether obiee can use Oracle LSH as a source or not but please refer below link. It says that
1) Users can then launch the Oracle Business Intelligence Dashboard
either through Oracle LSH or through a URL to see data visualizations.
2)
Oracle LSH Release 2.2 supports using OBIEE 10.1.3.4.1 for both programs and
visualizations and OBIEE 11.1.1.5.0 for visualizations only.
Please check with you administrator.
Thanks,
Amol
(Please mark this answer, if you find correct)

Information on Oracle's Life Sciences Platform

Hi all,
Oracle ST Development (Database, Application Server and Collaboration Suite) has identified many features that are uniquely appreciated by scientists, biologists, IT personnel, etc. in life sciences. More information on Oracle's Platform for Life Sciences including Tech eSeminars, white papers and some example code is available at http://otn.oracle.com/industries/life_sciences/content.html
Charlie Berger, Sr. Director of Product Management, Life Sciences and Data Mining

Nice information LaserSoft,
Many people forget this setting.

8th Oracle Life Sciences User Group Meeting, April 30, 2007, Boston, MA

8th International Oracle Life Sciences User Group Meeting
World Trade Center, Boston, MA, USA
April 30, 2007
Oracle Life Science User Group
The Oracle Life Sciences User Group (OLSUG) represents a worldwide association of people who share a vested interest in the successful deployment and use of Oracle products within the life sciences industry. The 8th International OLSUG meeting is designed to accelerate the success of users of Oracle products by providing a forum for sharing useful information and best practices, discovering novel and innovative practices, and exposing issues and limitations concerning Oracle products.
Meeting Format
The meeting will consist of exciting keynote presentations from industry renowned individuals. There will be workshops and discussions that are focused on topics of great interest, for example, the Semantic Web and database analytics. Oracle partners will be describing their latest offerings. In addition, there will be many presentations that have been selected to be of interest to scientists, application developers, architects and DBAs.
Submission Process
To be considered for a presentation, an abstract (max. 600 words) needs to be submitted by January 12, 2007 to OLSUG mailto: [email protected]
Please note, by submitting an abstract, you are granting OLSUG permission to post the abstract and presentation on the OLSUG Web site.
Important Dates
Last date for submission of abstracts: January 12, 2007
Presentation notification: February 1, 2007
8th International OLSUG Meeting: April 30, 2007
Topics of Interest as Related to Life Science
Distributed Data Access: Gateways, External Tables & Generic Connectivity.
Data Integration: Relational, XML & Semantic Web.
Supporting Many Data Types: Text, Images, XML & RDF.
Managing Lots of Data: Partitioning, RAC, ASM, Streams, Data Guard & Grid.
Enabling Secure Collaboration: Collaboration Suite, Portal & Security.
Finding Patterns and Insights: Data Mining, Statistics & Text Mining.
Application Development: Fusion Middleware, JDeveloper & Application Express.
Database Performance: Tuning tips.
Registration
Stay tuned for information about registration.
Conference Program Co-Chairs
Charlie Berger, Oracle, [email protected]
Mark Forster, Syngenta, [email protected]
Carolyn Hamm, Walter Reed Medical Center, [email protected]
Vijay Pillai, Oracle, [email protected]
Kevin Prime, MDL, [email protected]
Susie Stephens, Oracle, [email protected]
Henri Tuthill, Astrazeneca, [email protected]</nowiki>
Meeting Sponsor:
Bio-IT
http://www.bio-itworldcongress.com/index.asp

maybe OP want to extract all numbers from his inbox using regular expressions?

Training for Life Sciences Platform

Hi Everyone -
I'm just looking for the final piece of the puzzle here, so please correct me if I've missed the obvious.
I'm a DBA and my company is seriously considering implementing a Life Sciences Platform. Upon investigating what this actually means, I discovered that it is just a combination of various Oracle products pieced together to form whatever setup/environment is needed.
Is there or are there plans to have a Life Sciences training course, where the features that could potentially constitute a LS Platform are explained in more detail and an explaination of how to piece together all these features is laid out like it would be for any other product? I'd like to learn about how these features are actually used in a LS Platform as opposed to having to take 5 or 6 separate courses for each feature and trial/error how they all fit together. Does anyone know of any training available for planning, installing, and managing all the features of a LS Platform? I'm not interested in developing an application that does all the science stuff, just doing the DBA part of it all.
Thanks in advance for any help,
Andy

We are planning on making the new OU course available for viewing to attendees of the Feb. 5th Oracle Life Sciences User Group Meeting in London. Here is the link for the OLSUGM
http://otn.oracle.com/industries/life_sciences/index.html
Oracle Life Sciences Day/User Group Meetings
Coming Soon! 3rd Oracle Life Sciences User Group Meeting (Imperial College, London), February 5, 2004
To register please send an e-mail stating your name, job title and organization to [email protected]
The deadline for submitting a presentation abstract is January 5, 2004.

Modules in Pharmaceutical/Biotech/Life Sciences

What are the main modules in the Pharmaceutical/Biotech/Life Sciences arena?
Thanks
Guillaume Massey
RDBMS Manager
[email protected]

1. Oracle Clinical Admin and setup
which includes User Accounts, profiles, Domains, Codelists, Data Entry Preferences etc.
2. Study Definition ; Global Library management, Object hierarchy and creation, object Status and standards
Study Plan: Project, program, Organization, Sites, Investigators etc.
3. Study Design : design of Clinical study using the objects created in Study Definition, copy from study or global library, model study based on CRF design, create data Entry layout screens and test them.
4. Study conduct: Create Patients, patient positions, Enter patient data, write validation and derivation procedures to validate and clean data, resolve discrepanices and lock study.
5. Data Extract: Extract data into SAS views and create SAS datasets for analysis.
Optional: Reports
HTH
Cecil

Berkeley DB Sessions at Oracle OpenWorld Sept 19 - 23

All,
Just posting some of the Berkeley DB related sessions at Oracle OpenWorld this year. Hope to see you there.
Session ID:      S317033
Title:      Oracle Berkeley DB: Enabling Your Mobile Data Strategy
Abstract:      Mobile data is everywhere. Deploying applications and updates, as well as collecting data from the field and synchronizing it with the Oracle Database server infrastructure, is everyone?s concern today in IT. Mobile devices, by their very nature, are easily damaged, lost, or stolen. Therefore, enabling secure, rapid mobile deployment and synchronization is critically important. By combining Oracle Berkeley DB 11g and Oracle Database Lite Mobile Server, you can easily link your mobile devices, users, applications, and data with the corporate infrastructure in a safe and reliable manner. This session will discuss several real-world use cases.
Speaker(s):
Eric Jensen, Oracle, Principal Product Manager
Greg Rekounas, Rekounas.org,
Event:      JavaOne and Oracle Develop
Stream(s):      ORACLE DEVELOP, DEVELOP
Track(s):      Database Development
Tags:      Add Berkeley DB
Session Type:      Conference Session
Session Category:      Case Study
Duration:      60 min.
Schedule:      Wednesday, September 22, 11:30 | Hotel Nikko, Golden Gate
Session ID:      S318539
Title:      Effortlessly Enhance Your Mobile Applications with Oracle Berkeley DB and SQLite
Abstract:      In this session, you'll learn the new SQL capabilities of Oracle Berkeley DB 11g. You'll discover how Oracle Berkeley DB is a drop-in replacement for SQLite; applications get improved performance and concurrency without sacrificing simplicity and ease of use. This hands-on lab explores seamless data synchronization for mobile applications using the Oracle Mobile Sync Server to synchronize data with the Oracle Database. Oracle Berkeley DB is an OSS embedded database that has the features, options, reliability, and flexibility that are ideal for developing lightweight commercial mobile applications. Oracle Berkeley DB supports a wide range of mobile platforms, including Android.
Speaker(s):
Dave Segleau, Oracle, Product Manager
Ashok Joshi, Oracle, Senior Director, Development
Ron Cohen, Oracle, Member of Technical Staff
Eric Jensen, Oracle, Principal Product Manager
Event:      JavaOne and Oracle Develop
Stream(s):      ORACLE DEVELOP, DEVELOP
Track(s):      Database Development
Tags:      Add 11g, Berkeley DB, Embedded Development, Embedded Technology
Session Type:      Hands-on Lab
Session Category:      Features
Duration:      60 min.
Schedule:      Wednesday, September 22, 16:45 | Hilton San Francisco, Imperial Ballroom A
Session ID:      S317032
Title:      Oracle Berkeley DB: Adding Scalability, Concurrency, and Reliability to SQLite
Abstract:      Oracle Berkeley DB and SQLite: two industry-leading libraries in a single package. This session will look at use cases where the Oracle Berkeley DB library's advantages bring strong enhancements to common SQLite scenarios. You'll learn how Oracle Berkeley DB?s scalability, concurrency, and reliability significantly benefit SQLite applications. The session will focus on Web services, multithreaded applications, and metadata management. It will also explore how to leverage the powerful features in SQLite to maximize the functionality of your application while reducing development costs.
Speaker(s):
Jack Kreindler, Genie DB,
Scott Post, Thomson Reuters, Architect
Dave Segleau, Oracle, Product Manager
Event:      JavaOne and Oracle Develop
Stream(s):      ORACLE DEVELOP, DEVELOP
Track(s):      Database Development
Tags:      Add Berkeley DB
Session Type:      Conference Session
Session Category:      Features
Duration:      60 min.
Schedule:      Monday, September 20, 11:30 | Hotel Nikko, Nikko Ballroom I
Session ID:      S317038
Title:      Oracle Berkeley DB Java Edition: High Availability for Your Java Data
Abstract:      Oracle Berkeley DB Java Edition is the most scalable, highest performance Java application data store available today. This session will focus on the latest features, including triggers and sync with Oracle Database as well as new performance and scalability enhancements for high availability, with an emphasis on real-world use cases. We'll discuss deployment, configuration, and maximized throughput scenarios. You'll learn how you can use Oracle Berkeley DB Java Edition High Availability to increase the reliability and performance of your Java application data storage.
Speaker(s):
Steve Shoaff, UnboundID Corp, CEO
Alex Feinberg, Linkedin,
Ashok Joshi, Oracle, Senior Director, Development
Event:      JavaOne and Oracle Develop
Stream(s):      ORACLE DEVELOP, DEVELOP
Track(s):      Database Development
Tags:      Add Berkeley DB
Session Type:      Conference Session
Session Category:      Features
Duration:      60 min.
Schedule:      Thursday, September 23, 12:30 | Hotel Nikko, Mendocino I / II
Session ID:      S314396
Title:      Java SE for Embedded Meets Oracle Berkeley DB at the Edge
Abstract:      This session covers a special case of edge-to-enterprise computing, where the edge consists of embedded devices running Java SE for Embedded in combination with Oracle Berkeley DB Java Edition, a widely used embedded database. The approach fits a larger emerging trend in which edge embedded devices are "smart"--that is, they come equipped with an embedded (in-process) database for structured persistent storage of data as needed. In addition, these devices may optionally come with a thin middleware layer that can perform certain basic data processing operations locally. The session highlights the synergies between both technologies and how they can be utilized. Topics covered include implementation and performance optimization.
Speaker(s):      Carlos Lucasius, Oracle , Java Embedded Engineering
Carlos Lucasius works in the Java Embedded and Real-Time Engineering product team at Oracle Corporation, where he is involved in development, testing, and technical support. Prior to joining Sun (now Oracle), he worked as an consultant to IT departments at various companies in both North-America and Europe; specific application domains he was involved in include artificial intelligence, pattern recognition, advanced data processing, simulation, and optimization as applied to complex systems and processes such as intelligent instruments and industrial manufacturing. Carlos has presented frequently at scientific conferences, universities/colleges, and corporations across North-America and Europe. He has also published a number of papers in refereed international journals covering applied scientific research in abovementioned areas.
Event:      JavaOne and Oracle Develop
Stream(s):      JAVAONE
Track(s):      Java for Devices, Card, and TV
Session Type:      Conference Session
Session Category:      Case Study
Duration:      60 min.
Schedule:      Tuesday, September 21, 13:00 | Hilton San Francisco, Golden Gate 1
Session ID:      S313952
Title:      Developing Applications with Oracle Berkeley DB for Java and Java ME Smartphones
Abstract:      Oracle Berkeley DB is a high-performance, embeddable database engine for developers of mission-critical systems. It runs directly in the application that uses it, so no separate server is required and no human administration is needed, and it provides developers with fast, reliable, local persistence with zero administration. The Java ME platform provides a new, rich user experience for cell phones comparable to the graphical user interfaces found on the iPhone, Google Android, and other next-generation cell phones. This session demonstrates how to use Oracle Berkeley DB and the Java ME platform to deliver rich database applications for today's cell phones.
Speaker(s):      Hinkmond Wong, Oracle, Principal Member of Technical Staff
Hinkmond Wong is a principal engineer with the Java Micro Edition (Java ME) group at Oracle. He was the specification lead for the Java Community Process (JCP) Java Specification Requests (JSRs) 36, 46, 218, and 219, Java ME Connected Device Configuration (CDC) and Foundation Profile. He holds a B.S.E degree in Electrical Engineering from the University of Michigan (Ann Arbor) and an M.S.E degree in Computer Engineering from Santa Clara University. Hinkmond's interests include performance tuning in Java ME and porting the Java ME platform to many types of embedded devices. His recent projects include investigating ports of Java ME to mobile devices, such as Linux/ARM-based smartphones and is the tech lead of CDC and Foundation Profile libraries. He is the author of the book titled "Developing Jini Applications Using J2ME Technology".
Event:      JavaOne and Oracle Develop
Stream(s):      JAVAONE
Track(s):      Java ME and Mobile, JavaFX and Rich User Experience
Tags:      Add Application Development, Java ME, Java Mobile, JavaFX Mobile, Mobile Applications
Session Type:      Conference Session
Session Category:      Tips and Tricks
Duration:      60 min.
Schedule:      Monday, September 20, 11:30 | Hilton San Francisco, Golden Gate 3
I think I have them all. If I have missed any, please reply and I can update the list, or just post the info in the reply.
Thanks,
Greg Rekounas

are any links to access these Seminars??

Oracle Openworld

I am in the process of registering for the Oracle Openworld. To get more information regarding Jdeveloper ADF, JSF (ADF Faces) and Integration with Oracle Portal which one of the "special programs" should I pick ?
Oracle Develop (or) X-treme Program?
Please repond. It's urgent.
Thanks.

Hi Gustavo,
1 - Do I need to take my own laptop for the hands-on sessions?
No, the hands-on labs will be in rooms with PCs. But, it is always a good thing to have your laptop around there in any case.
2 - Is Oracle Develop included in the Full Conference Pass?
Yes, if you registered for Oracle Open World, you can attend the Oracle Develop sessions too. Please make sure to indicate you are interested in those sessions when you register though.
3 - Where can I find Full Oracle Develop schedule? I navigate through the contents but couldn't see date/time info.
It will probably be up on the web site in a week or two.
Keep an eye on http://oracle.com/openworld and make sure to pre-register for sessions you are interested in to make sure your place is secured.

Best Practice Life Science Pharmaceuticals

Dear all,
I was wondering if there is any news about the Life Science Best Practice Pharma. The latest Pharma Best Practice dates back 2007.
Maybe with 7.0 release there will also be an update on the best practice, but there is nothing to be found, regarding this subject.
Anybody got some insight?
Thanks.
Regs,
Ruud

Would love to get some insights too!
Agne
[indijos viza voyage|http://www.voyage-voyage.lt/viza-i-indija/]

Where to buy oracle openworld presentations?

Hi all,
I've been searching for the whole oracle website and could not find the url for buying all the presentations for oracle openworld. (or just database presentations)
can anybody help?
thanks
andrew

Hi;
Please see:
http://www.oracle.com/technetwork/database/features/availability/ow-papers-089200.html
http://www.oracle.com/openworld/index.html#
Regard
Helios

Are you attending Oracle OpenWorld?

Hello,
Are any of you planning to attend Oracle OpenWorld? If you are kindly reply to this thread, or send me an email to Marina,[email protected]
This will be my first time there so I am very excited. I was thinking about signing up for a session for us in the Oracle OpenWorld Unconference, so let me know if you think that this is a good idea.
http://wiki.oracle.com/page/Oracle+OpenWorld+Unconference?t=anon
Marina

Hi,
Sorry for this "off-topic" thing....
Is there a way or place where we could put our sample/example code files?? There's not feature to add attachments to our posts!!!
Thanks,
Nuno

IOUG Life Sciences SIG at Oracle OpenWorld 10:45 am - 12:00 pm

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