Is there a way to customize HTML5 output from Captivate?

I am working on some JavaScript navigation for a project in Captivate 6 and I noticed that when it gets published as HTML5 content, every JavaScript call that is performed is followed up by a cpCmndResume = 1 in the Project.js file.  It would make sense to leave it up to the programmer to include this call if it is necessary for the code.  It causes problems when testing the slides inside Captivate.  In order to test the project, I have to publish it and edit the Project.js content to remove all of the cpCmndResume = 1 commands.  I have a navBar that pauses slides via a JavaScript call and the cpCmndResume = 1 kills the functionality of that completely.  I have other nav buttons that get disabled when the slide is paused, so when they get clicked, they don't do anything, but the movie gets resumed because of the cpCmndResume = 1 in the Project.js after the JavaScript call.  Any ideas or suggestions to fix this issue? 

I think you need to remember that the HTML5 output from Captivate 6 has been designed for people that do NOT want to fiddle with the JS code after publishing.  It's targeted at non-programmers.
So if you've customised certain output components (e.g. playbars or navigation) and now find that things are not working as you like, the cause is most likely going to be something that you've modified away from the standard setup. 
It would be virtually impossible for Adobe to know in advance (and cater to) all of the possible wayts that programmers might want to hack their default output.  So, although you are by all means free to ask if they will help you with this issue, please understand that they may not wish to encourage this avenue all that much, as it could open up a whole can of worms for them.

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