Java runtime setting for application server

Hi,
I have developed a web service using jax-rpc. I use a HP package Jena2.1 to do onotology file parsing. When I build my web service and compile it there is no problem. I finds all the necessary classes in the Jena package installed on my machine.
Once I deploy the web service and the client makes a call to the method that uses the classes in Jena package, I get the following error on the server.
[#|2004-10-22T16:30:19.201-0400|SEVERE|sun-appserver-pe8.1|javax.enterprise.resource.webservices.rpc.server.http|_ThreadID=16;|caught throwable
java.lang.NoClassDefFoundError: com/hp/hpl/jena/ontology/OntModelSpec
     at ontocmp.OntoImpl.ontoCompare(OntoImpl.java:40)
     at ontocmp.OntoIF_Tie.invoke_ontoCompare(OntoIF_Tie.java:92)
     at ontocmp.OntoIF_Tie.processingHook(OntoIF_Tie.java:184)
     at com.sun.xml.rpc.server.StreamingHandler.handle(StreamingHandler.java:321)
     at com.sun.xml.rpc.server.http.JAXRPCServletDelegate.doPost(JAXRPCServletDelegate.java:443)
     at com.sun.enterprise.webservice.JAXRPCServlet.doPost(JAXRPCServlet.java:50)
     at javax.servlet.http.HttpServlet.service(HttpServlet.java:767)
     at javax.servlet.http.HttpServlet.service(HttpServlet.java:860)
     at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
     at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
     at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
     at java.lang.reflect.Method.invoke(Method.java:324)
     at org.apache.catalina.security.SecurityUtil$1.run(SecurityUtil.java:246)
     at java.security.AccessController.doPrivileged(Native Method)
     at javax.security.auth.Subject.doAsPrivileged(Subject.java:500)
     at org.apache.catalina.security.SecurityUtil.execute(SecurityUtil.java:273)
     at org.apache.catalina.security.SecurityUtil.doAsPrivilege(SecurityUtil.java:162)
     at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:236)
     at org.apache.catalina.core.ApplicationFilterChain.access$000(ApplicationFilterChain.java:55)
     at org.apache.catalina.core.ApplicationFilterChain$1.run(ApplicationFilterChain.java:145)
     at java.security.AccessController.doPrivileged(Native Method)
     at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:141)
     at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:262)
     at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:551)
     at org.apache.catalina.core.StandardContextValve.invokeInternal(StandardContextValve.java:225)
     at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:173)
     at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:551)
     at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:161)
     at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:551)
     at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:132)
     at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:551)
     at org.apache.catalina.core.ContainerBase.invoke(ContainerBase.java:933)
     at org.apache.coyote.tomcat5.CoyoteAdapter.service(CoyoteAdapter.java:160)
     at com.sun.enterprise.web.connector.grizzly.ProcessorTask.process(ProcessorTask.java:618)
     at com.sun.enterprise.web.connector.grizzly.ProcessorTask.process(ProcessorTask.java:500)
     at com.sun.enterprise.web.connector.grizzly.ProcessorTask.doTask(ProcessorTask.java:375)
     at com.sun.enterprise.web.connector.grizzly.WorkerThread.run(WorkerThread.java:55)
The client can access all other methods in the web service except for the method that uses Jena classes.
Could you please let me know the problems I am running into. How come the web service classes can compile and recognize the class but not run later?
Infact I am able to parse files in a java application but as a web services after deployment it fails.
Thanks for any help!!

In the console: Server1 -> JVM Settings -> Path Settings -> Classpath Suffix:. By default the app server ignore the system classpath (the CLASSPATH environment variable).
You can also modify the 'classpath-suffix' attribute in the <java-config> tag in the "server.xml" file in the domain1/server1/config directory (and restart the app server).
hth,
-Alexis

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wrapper.java.classpath.1=D:\JavaServiceWrapper\lib\wrapper.jar
wrapper.java.classpath.2=D:\Sun\jstudio_ent8\AppServ8.1UR2\lib\dom.jar
wrapper.java.classpath.3=D:\Sun\jstudio_ent8\AppServ8.1UR2\lib\xalan.jar
wrapper.java.classpath.4=D:\Sun\jstudio_ent8\AppServ8.1UR2\lib\xercesImpl.jar
wrapper.java.classpath.5=D:\Sun\jstudio_ent8\AppServ8.1UR2\lib\appserv-rt.jar
wrapper.java.classpath.6=D:\Sun\jstudio_ent8\AppServ8.1UR2\lib\appserv-ext.jar
wrapper.java.classpath.7=D:\Sun\jstudio_ent8\AppServ8.1UR2\lib\j2ee.jar
wrapper.java.classpath.8=D:\Sun\jstudio_ent8\AppServ8.1UR2\lib\admin-cli.jar
wrapper.java.classpath.9=D:\Sun\jstudio_ent8\AppServ8.1UR2\lib\appserv-admin.jar
wrapper.java.classpath.10=D:\Sun\jstudio_ent8\AppServ8.1UR2\lib\commons-launcher.jar
wrapper.java.classpath.11=D:\Sun\jstudio_ent8\AppServ8.1UR2\lib\jaxr-impl.jar
wrapper.java.classpath.12=D:\Sun\jstudio_ent8\AppServ8.1UR2\lib\relaxngDatatype.jar
wrapper.java.classpath.13=D:\Sun\jstudio_ent8\AppServ8.1UR2\lib\xsdlib.jar
wrapper.java.classpath.14=D:\Sun\jstudio_ent8\AppServ8.1UR2\lib\appserv-admin.jar
wrapper.java.classpath.15=D:\Sun\jstudio_ent8\AppServ8.1UR2\lib\activation.jar
wrapper.java.classpath.16=D:\Sun\jstudio_ent8\AppServ8.1UR2\lib\commons-logging.jar
wrapper.java.classpath.17=D:\Sun\jstudio_ent8\AppServ8.1UR2\lib\mail.jar
wrapper.java.classpath.18=D:\Sun\jstudio_ent8\AppServ8.1UR2\lib\appserv-env.jar
wrapper.java.classpath.19=D:\Sun\jstudio_ent8\AppServ8.1UR2\lib\optional.jar
wrapper.java.classpath.20=D:\Sun\jstudio_ent8\AppServ8.1UR2\lib
# Java Library Path (location of Wrapper.DLL or libwrapper.so)
wrapper.java.library.path.1=D:\JavaServiceWrapper\lib
wrapper.java.library.path.2=D:\Sun\jstudio_ent8\AppServ8.1UR2\bin
# Java Additional Parameters
wrapper.java.additional.1=-Dcom.sun.aas.instanceRoot=D:\Sun\jstudio_ent8\AppServ8.1UR2
wrapper.java.additional.2=-Dcom.sun.aas.instanceName=server
wrapper.java.additional.3=-Djava.library.path=D:\Sun\jstudio_ent8\AppServ8.1UR2\bin
wrapper.java.additional.4=-Dcom.sun.aas.configRoot=D:\Sun\jstudio_ent8\AppServ8.1UR2\config
wrapper.java.additional.5=-Djava.endorsed.dirs=D:\Sun\jstudio_ent8\AppServ8.1UR2\lib\endorsed
wrapper.java.additional.6=-Dcom.sun.aas.processLauncher="SE"
# Initial Java Heap Size (in MB)
wrapper.java.initmemory=64
# Maximum Java Heap Size (in MB)
wrapper.java.maxmemory=1024
# Application parameters. Add parameters as needed starting from 1
wrapper.app.parameter.1=com.sun.enterprise.cli.framework.CLIMain
wrapper.app.parameter.2=start-domain
wrapper.app.parameter.3=domain1
# Wrapper Logging Properties
# Format of output for the console. (See docs for formats)
wrapper.console.format=PM
# Log Level for console output. (See docs for log levels)
wrapper.console.loglevel=INFO
# Log file to use for wrapper output logging.
wrapper.logfile=D:\JavaServiceWrapper\logs\JSE8Server.log
# Format of output for the log file. (See docs for formats)
wrapper.logfile.format=LPTM
# Log Level for log file output. (See docs for log levels)
wrapper.logfile.loglevel=INFO
# Maximum size that the log file will be allowed to grow to before
# the log is rolled. Size is specified in bytes. The default value
# of 0, disables log rolling. May abbreviate with the 'k' (kb) or
# 'm' (mb) suffix. For example: 10m = 10 megabytes.
wrapper.logfile.maxsize=32m
# Maximum number of rolled log files which will be allowed before old
# files are deleted. The default value of 0 implies no limit.
wrapper.logfile.maxfiles=8
# Log Level for sys\event log output. (See docs for log levels)
wrapper.syslog.loglevel=NONE
# Wrapper Windows Properties
# Title to use when running as a console
wrapper.console.title=JSE8Server
# Wrapper Windows NT\2000\XP Service Properties
# WARNING - Do not modify any of these properties when an application
# using this configuration file has been installed as a service.
# Please uninstall the service before modifying this section. The
# service can then be reinstalled.
# Name of the service
wrapper.ntservice.name=JSE8Server
# Display name of the service
wrapper.ntservice.displayname=JSE8Server
# Description of the service
wrapper.ntservice.description=Java Studio Enterprise 8 Applicaton Server
# Service dependencies. Add dependencies as needed starting from 1
wrapper.ntservice.dependency.1=
# Mode in which the service is installed. AUTO_START or DEMAND_START
wrapper.ntservice.starttype=AUTO_START
# Should a console window appear?
wrapper.ntservice.console=false
# Can the service to interact with the desktop?
wrapper.ntservice.interactive=false
# The priority of the service in Windows (LOW, NORMAL, HIGH, REALTIME)
wrapper.ntservice.process_priority=NORMAL

Java runtime setting for application server

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