Mismatch of JDK and JRE versions cause screen freeze for applications ?

Hi,
My Java swing application is built on jdk1.3.1_17 in server. It was working fine without any issue when I use Java webstart 1.0.1 to download the client part of the application and JRE 1.3.1_10 to run the application from my local desktop.
For better performance, I upgraded my local desktop to 1.4.2_07 version of JRE and same version of java Web start 2 months before. From that day, I am facing a "Screen freeze" issue in my application. It means, while working on the application, the application screen goes blank or White screen. This issue may come while doing any activity all of a sudden , there is no pattern found.
Is there any reason like incompatibility of lower JDK version and higher JRE/JWS versions could have caused this issue ? Any Idea plz
Thanks in advance
David

I'm using a 15" Macbook Pro with Retina Display. The applications I have are Indesign, Illustrator, and Photoshop. Over a period of time, using these programs will make the screen turn blank. Sometimes, the screen turns a solid color and it just happens to be what ever color I've been using with the Color picker tool.
I don't know for sure what it could be. I tried checking Disk Utility (one problem was solve, but blank screen wasn't fixed).
I have to force reboot only to be faced with another blank screen. I either keep trying or keep cmd+opt+p+r until the screen boots back to normal. (This is probably due to the programs not shutting down properly when the laptop blank screens)

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