Mixing HD 1080i50 25 fps with 1080i60 29.97 fps The way to go?

Hi everyone,
I'm working on a project in Final Cut Studio Pro 6.0.5 Macbook Pro.
70% of my rushes are 1080i50 but a good 30% are 1080i60. On top of that, a large amount of the 1080i50 rushes have been digitiized DV PAL, not by me!
I figure I will need to conform considering the mixed formats. I know I won't have too much trouble re-digitising the DV Pal to it correct 1080i50 but I am concerned about the 1080i60.
I have begun my project in with a 1080i50 timeline and have put the the 1080i60 in it and it works ok, strobes a bit. I'm wondering if this will be ok when I come to conform or if it will continue strobing.
If anyone has worked with these mixed mediums before please advise.
Thanks,
Jamie

Thanks Gerrry,
I could get the original material that is DV and recapture but it is 15hrs worth. I'm cutting a doc. So i figured it would be better just to conform it later rather than re-capturing again.
Do you think that is ok?

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