Mountain Lion slow network

We recently started using Mountain Lion at work, installed it fresh on a formatted server and we're having some terrible problems with the network. We have reinstalled twice and the problem persists;
Its running terribly slow on the local network. Downloading a small (~2MB) PDF is taking around 30 - 60 seconds. Internet is running fine, downloading goes at a realistic speed, on both the server and the machines we are trying to connect locally.
The server is connected via ethernet, the other machines we have connected via ethernet and WiFi with no difference. Everything is running slow, Wiki Server, Profile Manager, WebDAV, etc.. Initially we thought it was due to the server memory, as it was running around 90% usage, but after upgrading it we're still having the same issues. A lion server in the exact same situation works fine.
Any advice would be appreciated.

Here are the netstat results.
tcp:
          5131921 packets sent
                    3586548 data packets (2802548362 bytes)
                    20066 data packets (30331998 bytes) retransmitted
                    0 resends initiated by MTU discovery
                    1331930 ack-only packets (752 delayed)
                    0 URG only packets
                    16 window probe packets
                    61026 window update packets
                    133333 control packets
                    0 data packets sent after flow control
          4844274 packets received
                    2781491 acks (for 2785694807 bytes)
                    293105 duplicate acks
                    0 acks for unsent data
                    1633476 packets (20872370 bytes) received in-sequence
                    38414 completely duplicate packets (134623 bytes)
                    1 old duplicate packet
                    12 packets with some dup. data (4093 bytes duped)
                    1692 out-of-order packets (2322772 bytes)
                    16 packets (16 bytes) of data after window
                    16 window probes
                    73943 window update packets
                    20428 packets received after close
                    1 bad reset
                    0 discarded for bad checksums
                    0 discarded for bad header offset fields
                    0 discarded because packet too short
          53153 connection requests
          49928 connection accepts
          5221 bad connection attempts
          617 listen queue overflows
          96449 connections established (including accepts)
          103163 connections closed (including 15261 drops)
                    1723 connections updated cached RTT on close
                    1723 connections updated cached RTT variance on close
                    524 connections updated cached ssthresh on close
          6153 embryonic connections dropped
          2781238 segments updated rtt (of 2039724 attempts)
          2029 retransmit timeouts
                    46 connections dropped by rexmit timeout
                    0 connections dropped after retransmitting FIN
          18 persist timeouts
                    0 connections dropped by persist timeout
          5084 keepalive timeouts
                    0 keepalive probes sent
                    29 connections dropped by keepalive
          244119 correct ACK header predictions
          1546225 correct data packet header predictions
          2696 SACK recovery episodes
          17545 segment rexmits in SACK recovery episodes
          24059497 byte rexmits in SACK recovery episodes
          138780 SACK options (SACK blocks) received
          1600 SACK options (SACK blocks) sent
          0 SACK scoreboard overflow
udp:
          724172 datagrams received
          0 with incomplete header
          0 with bad data length field
          0 with bad checksum
          23199 dropped due to no socket
          4747 broadcast/multicast datagrams dropped due to no socket
          1 dropped due to full socket buffers
          0 not for hashed pcb
          696225 delivered
          719607 datagrams output
ip:
          3118895 total packets received
          0 bad header checksums
          0 with size smaller than minimum
          0 with data size < data length
          0 with ip length > max ip packet size
          0 with header length < data size
          0 with data length < header length
          0 with bad options
          0 with incorrect version number
          0 fragments received
          0 fragments dropped (dup or out of space)
          0 fragments dropped after timeout
          0 packets reassembled ok
          3109539 packets for this host
          1679 packets for unknown/unsupported protocol
          0 packets forwarded (0 packets fast forwarded)
          7057 packets not forwardable
          527 packets received for unknown multicast group
          0 redirects sent
          2959671 packets sent from this host
          0 packets sent with fabricated ip header
          0 output packets dropped due to no bufs, etc.
          1039 output packets discarded due to no route
          0 output datagrams fragmented
          0 fragments created
          0 datagrams that can't be fragmented
          0 tunneling packets that can't find gif
          0 datagrams with bad address in header
          0 packets dropped due to no bufs for control data
icmp:
          23292 calls to icmp_error
          0 errors not generated 'cuz old message was icmp
          Output histogram:
                    echo reply: 576
                    destination unreachable: 23292
          0 messages with bad code fields
          0 messages < minimum length
          0 bad checksums
          0 messages with bad length
          0 multicast echo requests ignored
          0 multicast timestamp requests ignored
          Input histogram:
                    destination unreachable: 1672
                    echo: 576
          576 message responses generated
          ICMP address mask responses are disabled
igmp:
          7 messages received
          0 messages received with too few bytes
          0 messages received with wrong TTL
          0 messages received with bad checksum
          0 V1/V2 membership queries received
          0 V3 membership queries received
          0 membership queries received with invalid field(s)
          0 general queries received
          0 group queries received
          0 group-source queries received
          0 group-source queries dropped
          7 membership reports received
          0 membership reports received with invalid field(s)
          7 membership reports received for groups to which we belong
          0 V3 reports received without Router Alert
          8 membership reports sent
ipsec:
          0 inbound packets processed successfully
          0 inbound packets violated process security policy
          0 inbound packets with no SA available
          0 invalid inbound packets
          0 inbound packets failed due to insufficient memory
          0 inbound packets failed getting SPI
          0 inbound packets failed on AH replay check
          0 inbound packets failed on ESP replay check
          0 inbound packets considered authentic
          0 inbound packets failed on authentication
          0 outbound packets processed successfully
          0 outbound packets violated process security policy
          0 outbound packets with no SA available
          0 invalid outbound packets
          0 outbound packets failed due to insufficient memory
          0 outbound packets with no route
ip6:
          2460980 total packets received
          0 with size smaller than minimum
          0 with data size < data length
          0 with bad options
          0 with incorrect version number
          39 fragments received
          0 fragments dropped (dup or out of space)
          1 fragment dropped after timeout
          0 fragments that exceeded limit
          19 packets reassembled ok
          2459520 packets for this host
          0 packets forwarded
          890 packets not forwardable
          0 redirects sent
          2955232 packets sent from this host
          0 packets sent with fabricated ip header
          0 output packets dropped due to no bufs, etc.
          5328 output packets discarded due to no route
          64 output datagrams fragmented
          128 fragments created
          0 datagrams that can't be fragmented
          0 packets that violated scope rules
          890 multicast packets which we don't join
          Input histogram:
                    hop by hop: 55
                    TCP: 1861327
                    UDP: 598808
                    fragment: 39
                    ICMP6: 695
          Mbuf statistics:
                    1015622 one mbuf
                    two or more mbuf:
                              lo0= 1421891
                    23465 one ext mbuf
                    0 two or more ext mbuf
          0 packets whose headers are not continuous
          0 tunneling packets that can't find gif
          0 packets discarded due to too may headers
          0 failures of source address selection
          0 forward cache hit
          0 forward cache miss
          0 packets dropped due to no bufs for control data
icmp6:
          1 call to icmp_error
          0 errors not generated because old message was icmp error or so
          0 errors not generated because rate limitation
          Output histogram:
                    router solicitation: 19
                    neighbor solicitation: 47
                    neighbor advertisement: 45
                    MLDv2 listener report: 31
          0 messages with bad code fields
          0 messages < minimum length
          0 bad checksums
          0 messages with bad length
          Input histogram:
                    neighbor solicitation: 46
                    neighbor advertisement: 464
          Histogram of error messages to be generated:
                    0 no route
                    0 administratively prohibited
                    0 beyond scope
                    0 address unreachable
                    0 port unreachable
                    0 packet too big
                    0 time exceed transit
                    1 time exceed reassembly
                    0 erroneous header field
                    0 unrecognized next header
                    0 unrecognized option
                    0 redirect
                    0 unknown
          0 message responses generated
          0 messages with too many ND options
          0 messages with bad ND options
          0 bad neighbor solicitation messages
          0 bad neighbor advertisement messages
          0 bad router solicitation messages
          0 bad router advertisement messages
          0 bad redirect messages
          0 path MTU changes
ipsec6:
          0 inbound packets processed successfully
          0 inbound packets violated process security policy
          0 inbound packets with no SA available
          0 invalid inbound packets
          0 inbound packets failed due to insufficient memory
          0 inbound packets failed getting SPI
          0 inbound packets failed on AH replay check
          0 inbound packets failed on ESP replay check
          0 inbound packets considered authentic
          0 inbound packets failed on authentication
          0 outbound packets processed successfully
          0 outbound packets violated process security policy
          0 outbound packets with no SA available
          0 invalid outbound packets
          0 outbound packets failed due to insufficient memory
          0 outbound packets with no route
rip6:
          0 messages received
          0 checksum calcurations on inbound
          0 messages with bad checksum
          0 messages dropped due to no socket
          0 multicast messages dropped due to no socket
          0 messages dropped due to full socket buffers
          0 delivered
          0 datagrams output
pfkey:
          6 requests sent to userland
          304 bytes sent to userland
          histogram by message type:
                    register: 3
                    x_spdadd: 2
                    x_spddump: 1
          0 messages with invalid length field
          0 messages with invalid version field
          0 messages with invalid message type field
          0 messages too short
          0 messages with memory allocation failure
          0 messages with duplicate extension
          0 messages with invalid extension type
          0 messages with invalid sa type
          0 messages with invalid address extension
          7 requests sent from userland
          800 bytes sent from userland
          histogram by message type:
                    register: 3
                    x_spdadd: 2
                    x_spddump: 2
          0 messages toward single socket
          0 messages toward all sockets
          0 messages toward registered sockets
          0 messages with memory allocation failure
Activity monitor is looking fine. Safari Web Content jumps up if we accidently leave Safari running, other than that nothing is even high.

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    =================
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    =================
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