Non-standard installation messing up PPro 3.2.0?

I have a computer with a relatively low capacity hard drive to which I added a large capacity drive.  The operating system is on the smaller drive (C:).  Because CS3 Production Premium was large, I decided to install it on the larger drive (D:).  So all my CS3 files are in D:/Program Files/Adobe...
Overall, everything seems to work okay.  However, there are 2 facets of PPro CS3 that bug the heck out of me...
1.  When I set the columns in the Project window to what I want to see (I don't use "Labels" for example) and save the project the changes disappear the next time I open the project!  (i.e., the go back to the Default column settings)
2.  This one's really weird... when I first installed CS3 I was able to use Dynamic link in PPro okay.  I could create a new After Effects Composition from PPro or import one I'd already done in AE.  Now when I select "New AE Composition" I get "An unknown error occurred during the import operation." and when I select "Import AE..." nothing happens at all!!  Other Dynamic Link stuff seems to work fine...  PPro opens Encore when I "Export to Encore" and it opens PhotoShop if I choose "Edit in PhotoShop".
Aside from a full re-install (which I'm loath to do), can anyone think of a fix I can look into?
Thanks in advance!
- Jim 8^)

Harm,
"Low capacity" is, of course, relative.  Since I do a LOT of video and graphics, the 70GB C: drive is (to me) "low capacity".  Your statement-
"40 GB is sufficient, albeit marginal, and anything larger than 80 GB is more than enough."
fascinates me as I'm not sure what you're saying 40GB is sufficient for or on what basis you say that 80GB is more than enough.  I'm not trying to give you a hard time, honestly, I just don't understand your comment(s).
Anyway, thanks much for your response!
- Jim 8^}

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    [url http://forum.java.sun.com/thread.jsp?thread=468188&forum=31]Cross-post

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