Odd color correction on raw import

I have a Canon G9 that I've had converted to shoot IR. I'm having trouble with Lightroom on the CR2 files the camera is putting out. Example here:
http://gallery.me.com/hteasley#100119
The first one is what I expect: what I see in the camera, what the JPEG looks like, what the CR2 file looks like when I import it into iPhoto, and interestingly enough, what the CR2 thumbnail looks like in Lightroom on first import. But when I use the Lightroom loupe on the file to look at it, it gets rendered to look like the second image in that gallery, which is terrible.
To be clear, I'm not talking about having done any in-camera editing of the raw files, and I'm not talking about the JPEGs. I'm talking about iPhoto bringing the file in how I would say "correctly", and Lightroom always adjusting it to be "hideous". I've changed camera profiles, and can't find one that looks like the iPhoto version. I've worked through various Hue/Sat adjustments within Lightroom and can't recover the image to look like the correct version.
What is Lightroom doing? I can't find any setting that results in Lightroom keeping the file looking like it does in the import preview, how it looks in the thumbnail before I view it with the loupe. Any help would be much appreciated.

The image you see in iPhoto is not the rendered RAW file it is the jpg preview file embedded in the RAW file you see on the back of the camera (iPhoto does not render RAW files). This is the same as the initial image you see for a moment in LR when you import the file, until LR renders the RAW file. LR doesn't make any "changes" to the file, but imports it and renders it acording to any settings you may have made in LR. The colour settings will be found in the calibration box in the develop mode and there may be different settings availble according to the camera you are using.
See number 6 in the top ten gotchas here. .
As you have made a conversion to your camera none of the existing camera calibrations will apply and you will need to use Adobes DNG editor to create a new one

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