Owb 11gR2 control center server can not stop

Hi guys
I have installed Oracle 11.2.0.2 on Windows 2008 server (64 bit) and installed OWB 11.2.0.2 on my desktop (xp) , now I can connect control server from client and deploying mapping etc.
But I met a issue is I could not stop the control server. If I use the sql script "stop_service.sql " to stop it, the result is "available" and "Client managed service" . If I used the porgram\administrator\stop control center server from OS, it says "please check that the service is running in manual mode" and "shutdown failed".
Any idea about it? how can I fix it?
Cheers.

Did you make sure that the Control Center Agent is running on your database server?
Test it by running the show_service.sql or service_doctor.sql as user OWBSYS. The scripts can be found in directory +$OWB_HOME/owb/rtp/sql+. If the CCA is down or wrongly configured, e.g. you changed OWBSYS' password after installation, such that it can't connect, the service_doctor script will tell you. Please correct any errors or misconfigurations and start the CCA afterwards using the start_service.sql script from the same directory.

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So after a few days of searching this forum (and many other online forums), I was unable to find anything related to this specific topic at all. Since I beat my head against a wall for a few days to figure this out, I figured if I can save even one other poor soul from hitting this issue then this post would be worth it.
In short, we have a two tier'd setup for OWB 11gR2 that we're building out as part of a data center migration project. Our intent was to run the control center service on an application server (completely apart from the database server which according to Oracle support, isn't normal - and initially, they told us wasn't supported... until I forwarded them a copy of the install & admin guide and they realized it was a valid architecture in that document on page 1-5... what the bag??). We installed the OWB standalone client (important to note, on a Red Hat Linux 64 bit box) exactly as per the instructions.
So onto the actual problem. When we tried to launch the control center service, it would start with the following output:
2013/05/22-10:58:53-CDT [558385E3][] Platform Service for null
2013/05/22-10:58:54-CDT [558385E3][] Connection Manager - OCI fix performed
2013/05/22-10:59:09-CDT [558385E3][] Thin driver connection time - 14604 millisecond(s)
2013/05/22-10:59:09-CDT [558385E3][] Connection Manager - property user.timezone value is US/Central
2013/05/22-10:59:09-CDT [558385E3][] Connection Manager - connection.timezone not set. Defaulting to value SERVICE
2013/05/22-10:59:09-CDT [558385E3][] Connection Manager - using service timezone US/Central
2013/05/22-10:59:09-CDT [558385E3][] Connection Manager - defaultimg session timezone offset to -05:00
2013/05/22-10:59:09-CDT [558385E3][] java.io.IOException: No such file or directory
at java.io.UnixFileSystem.createFileExclusively(Native Method)
at java.io.File.createNewFile(File.java:883)
at oracle.wh.runtime.platform.service.util.TraceManager.createNewFile(TraceManager.java:579)
at oracle.wh.runtime.platform.service.util.TraceManager.switchTraceFiles(TraceManager.java:735)
at oracle.wh.runtime.platform.service.util.TraceManager.switchTraceFiles(TraceManager.java:702)
at oracle.wh.runtime.platform.service.util.TraceManager.initialize(TraceManager.java:308)
at oracle.wh.runtime.platform.service.ServiceObject.initializeTrace(ServiceObject.java:30)
at oracle.wh.runtime.platform.service.Service.<init>(Service.java:137)
at oracle.wh.runtime.platform.service.Service.main(Service.java:975)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at Launcher.main(Launcher.java:175)
2013/05/22-10:59:09-CDT [558385E3][] Free Memory(bytes)=218257400 Total Memory(bytes)=248578048 Used Memory(bytes)=30320648 Used Memory(percent)=13%
2013/05/22-10:59:09-CDT [558385E3][] Control Center Service Version 11.2.0.3.0 starting
2013/05/22-10:59:09-CDT [558385E3][] Startup due to manual request
2013/05/22-10:59:09-CDT [558385E3][] Control Center Repository Name OWBSYS on Service w409d at Host wdprd00a0043
2013/05/22-10:59:09-CDT [558385E3][] Explicit garbage collection - every 1 execution(s)
2013/05/22-10:59:09-CDT [558385E3][] Initializing Platform
2013/05/22-10:59:09-CDT [558385E3][] Recovery starting
2013/05/22-10:59:09-CDT [558385E3][] Service startup complete
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cd <owb_home>/bin/unix
nohup echo <unified_repos_password> | run_service.sh -manual 1 control_center_service_home unified_repository servername listenerport servicename &control_center_service_home --Oracle Home where OWB software is installed
unified_repository --Schema name of the Unified Repository (owbsys)
servername --Server where Unified Repository is installed
listenerport --Listener port for the DB
servicename --Service name of the DB
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After much research and playing around, and a moment of sheer, blind luck (I created myself a unix alias to issue the run_service command, and accidentally added an additional dash in front of the node id parameter i.e. "-1"), the warning dissappeared and we also were able to deploy a sqlldr map without a warning as well (the other symptom of this was that any sqlldr map would deploy with a warning saying it couldn't find/create the .ctl file... but it was looking in the OWB home on the DB server, not the application server!!).
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Forget to mention that i did execute the service_doctor.sql and the result is the following
All PL/SQL packages and functions are valid
Platform properties have been loaded correctly
Platform location has been seeded correctly
NLS messages have been loaded correctly
The platform service is available
There is a problem accessing the service startup script from the databaseserver
Here is the detailed error message which contains the name of the startscript file:-
Service startup file '/app/oracle/owb/bin/unix/run_service.sh' is notaccessible from the database server on instance number 1
Please verify that the disk containing the file is visible to thedatabase server
Please verify that the database server account has access rights on thefile
Connection information stored within the repository is correct
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Owb 11gR2 control center server can not stop

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