Programs using multiple platforms

I have an online time tracking program that calls for JavaRE 1.3.x and an internal instant messaging client that calls for JavaRE 1.4.x
The time tracking program will run on MS VM but proves to have lock up issues. The instant messaging client can also run on the MS VM without issue. So, to eliminate all issues I need to have the time tracking program use JRE 1.3.x and the Instant messaging client use JRE 1.4.x or MS VM.
If I install the JRE 1.3.x and tell it to not be default, Instant messaging will work (through the MS VM) but the time tracking with have lock up issues as it will also use the MS VM. If I leave JRE 1.3.x checked as default, the time tracking software will work correctly but the instant messaging client will try to use JRE and redirects the user to the Java website to upgrade.
I hope this makes sense ... any suggestions?

I agree with all of your statements. From what I understand, the tracking program upgrade is still about a year out and the instant message program is scheduled for rollout next month.
Thanks for the help ... I figured that this was the answer.

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