SATA2 HDD slow based on these hdparm -Tt /dev/sda numbers [SOLVED]

I have a EG45M-UD2H running BIOS F3 (latest one as of the time of this post).  I'm noticing a pretty significant HDD speed decrease with this board vs. my old board.  If I take the same Seagate 7200.12 (1 gig) HDD and benchmark it on another motherboard, the cached reads are about 7x higher. 
For example, under the EG45M-UD2H:
# hdparm -Tt /dev/sda
/dev/sda:
Timing cached reads: 2692 MB in 2.00 seconds = 1346.47 MB/sec
Timing buffered disk reads: 386 MB in 3.01 seconds = 128.13 MB/sec
On another motherboard (DFI LP P35-T2R):
# hdparm -Tt /dev/sda
/dev/sda:
Timing cached reads: 14740 MB in 2.00 seconds = 7378.19 MB/sec
Timing buffered disk reads: 368 MB in 3.02 seconds = 122.04 MB/sec
The only relevant settings I see in the BIOS are:
BIOS settings: Integrated Peripherals>SATA RAID/AHCI Mode [AHCI]  <-- I have also set this to disable and there is no difference
SATA Port0-3 Native Mode [Enabled or Disabled] <-- I tried both and there is no difference
Does anyone have any thoughts?
$ lsmod | grep ahci
ahci 34321 4
libata 151860 4 pata_acpi,ata_generic,ahci,pata_jmicron
Last edited by graysky (2009-12-28 19:36:50)

markp1989 wrote:
sounds like hddparm may off messed up,  my p45 board isnt on right now, but i loged in to my server and did a hddparm test ....
mark@torrentslave:~$ sudo hdparm -Tt /dev/sda
/dev/sda:
Timing cached reads: 2308 MB in 2.00 seconds = 1153.72 MB/sec
Timing buffered disk reads: 332 MB in 3.01 seconds = 110.25 MB/sec
mark@torrentslave:~$
the 7000mbs cache read, way to high for a sata 3gb interface, so i think the first reading is a mistake.
i dont know of any other hdd test utils apart from dding to /dev/null.  but some one will probably mention one soon
Thanks for the info, markp.  Can you post the output from your P45 board once you have that system powered up?  To answer your question, there's bonnie++ but it takes quiet a long time to run.
EDIT: This whole issue is a non-issue -- PEBKAC.  Seems as though I was misusing the -T switch:
hdparm manpage wrote:
-T
Perform  timings  of  cache reads for benchmark and comparison purposes.  This displays the speed of reading directly from the Linux buffer  cache  without  disk  access. This measurement is essentially an indication of the throughput of the processor, cache, and memory of the system under test.
Last edited by graysky (2009-12-28 19:34:45)

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    When I made that change, I was using Snow Leopard, and it ran really fast but since I upgraded to Lion it takes longer to load and to open apps and I noticed that when loading or opening apps the old HDD works a lot, I can hear it, this didn't happen before Lion, so I don't know why the HDD is "participating" on the booting process and slowing down the system.
    Is worth to mention that in the SSD I have only the OS and in the HDD I have only my Home folder.
    Any help/tip will be appreciated.

    richardpsic wrote:
     Is worth to mention that in the SSD I have only the OS and in the HDD I have only my Home folder.
    Well this could be the problem.
    I tinkered with Lion when I had it running on my other machine and noticed in the (now) hidden Users/Library/Preferences folder there now a lot more additions there than the normal .plist (preference files) than before.
    I don't quite know what to make of it, perhaps it makes it easier to transfer a user to another machine perhaps?
    Allowing users to have programs only in their particular users instead of globally?
    Anyway, if you move your Home folder back to the SSD, but without the files (put them in new folders like Documents 2, Pictures 2 and so forth) and have iTunes and iPhoto link to their libraries on the other drive, you should see less of that behavior.
    Apple doesn't expect one to move their home folder to another drive or partition, so any performance tweaks done need to return to what Apple expects before you upgrade.
    Same thing with system level tweaks, you have to disable them before running Software update or upgrading.
    https://discussions.apple.com/message/16276201#16276201
    Use the free Tinker Tool to turn on your invisible files, also make sure to backup your files before tinkering around.

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