Server Upgrade Problem

First off, I am kinda a noob when it come to macs and mac servers.
I just got contracted by a company that runs about 40 Mac clients and 60 windows clients. Our Mail and shares are handled by a OS X 10.3.9 XServe. We have had mail problems and everytime I add a user in OD...the server laggs really bad and the server is unreachable(i.e. I cant ping it and all the shares/mail goes down). But then it goes back to normal if I just unplug the server from the network.
These issues inspired us to upgrade the server to 10.4. First I installed all the downloadable upgrades. Got the DVD and ran the install on our extra Xserve just as a test run. I upgraded the OS, not a clean install. The install went fine with no errors. Then it restarted and it never gets past the icon of the Mac smiley face and the alternating question mark.
Am i stuck having to run a clean install and migrate the data?

http://www.apple.com/server/documentation/
3rd PDF listed there, "Upgrading and Migrating"
starting page 31
Be careful to read each section, they mention "tar" early on, but that won't preserve all you need when dealing with certain items. "ditto" in 10.3 will be good for any Mac files with dual-fork files.
As a general guideline (I'm simplifying but it's a guideline), what you can see in the GUI propbably has a resource & a data fork, and files hidden from the GUI ( /private/etc , /private/var /usr , /bin ) probably do not. They recommend using ditto for the mail files. A key point is that ditto makes sense for some things in 10.3 , but move away from it in 10.4
NB page 37, "save a copy of the file /usr/bin/cyrus/bin/ctl_mboxlist"
and page 42 onward.
Good luck !

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    02:49:36:LoadPrerequisites: Done adding prerequisites checks
    02:49:36:
    02:49:36:**************************************************
    02:49:36:CheckPrerequisites: Checking Memory check prereq.
    02:49:36:CheckPrerequisites:         Logic Type:and    MemoryCheck-8gbWarn: 0
    02:49:36:
    02:49:36:CheckPrerequisites:     Memory check: Passed
    02:49:36:
    02:49:36:**************************************************
    02:49:36:
    02:49:36:**************************************************
    02:49:36:CheckPrerequisites: Checking Microsoft SQL Server 2008 Analysis Management Objects prereq.
    02:49:36:Entered RequiredAMO
    02:49:36:Trying alternate method of detection using Assembly.Load
    02:49:36:CheckPrerequisites:         Logic Type:and    AMO-err: 0
    02:49:36:
    02:49:36:CheckPrerequisites:     Microsoft SQL Server 2008 Analysis Management Objects: Passed
    02:49:36:
    02:49:36:**************************************************
    02:49:36:
    02:49:36:**************************************************
    02:49:36:CheckPrerequisites: Checking Processor speed check prereq.
    02:49:36:CheckPrerequisites:         Logic Type:and    ProcessorSpeedCheck2.5MHz-Warn: 0
    02:49:36:CheckPrerequisites:         Logic Type:and    ProcessorCoreCheck2Core-Warn: 0
    02:49:36:
    02:49:36:CheckPrerequisites:     Processor speed check: Passed
    02:49:36:
    02:49:36:**************************************************
    02:49:36:
    02:49:36:**************************************************
    02:49:36:CheckPrerequisites: Checking Windows Service Pack check prereq.
    02:49:36:CheckPrerequisites:         Logic Type:and    Win2k8R2Sp1Check-Err: 0
    02:49:36:CheckPrerequisites:
    02:49:36:CheckPrerequisites:                 ProductType was not a match.  Looking for: LanmanNT Found: ServerNT
    02:49:36:CheckPrerequisites:         Logic Type:or    Win2k8R2Sp1DCCheck-Err: 2
    02:49:36:CheckPrerequisites:
    02:49:36:CheckPrerequisites:                 The value 6.1.7601.65536 was not within the range 6.2.0 to 9.9.9999.
    02:49:36:CheckPrerequisites:         Logic Type:or    WinSrvrVNextCheck-Err: 2
    02:49:36:CheckPrerequisites:
    02:49:36:CheckPrerequisites:                 ProductType was not a match.  Looking for: LanmanNT Found: ServerNT
    02:49:36:CheckPrerequisites:         Logic Type:or    WinSrvrVNextDCCheck-Err: 2
    02:49:36:
    02:49:36:CheckPrerequisites:     Windows Service Pack check: Passed
    02:49:36:
    02:49:36:**************************************************
    02:49:36:
    02:49:36:**************************************************
    02:49:36:CheckPrerequisites: Checking Microsoft Report Viewer Redistributable check prereq.
    02:49:36:Entered RequiredReportViewer
    02:49:36:CheckPrerequisites:         Logic Type:and    RptVwrCheck-err: 0
    02:49:36:
    02:49:36:CheckPrerequisites:     Microsoft Report Viewer Redistributable check: Passed
    02:49:36:
    02:49:36:**************************************************
    02:49:36:
    02:49:36:**************************************************
    02:49:36:CheckPrerequisites: Checking PowerShell 2.0 check prereq.
    02:49:36:CheckPrerequisites:         Logic Type:and    PowerShell2Check-err: 0
    02:49:36:CheckPrerequisites:         Logic Type:or    PowerShell2Check32-err: 0
    02:49:36:
    02:49:36:CheckPrerequisites:     PowerShell 2.0 check: Passed
    02:49:36:
    02:49:36:**************************************************
    02:49:36:
    02:49:36:**************************************************
    02:49:36:CheckPrerequisites: Checking ADO.NET Data Services Update check prereq.
    02:49:36:Loading System.Data.Services.Client, Version=3.5.0.0, Culture=neutral, PublicKeyToken=b77a5c561934e089
    02:49:36:Found version 3.5.30729.5420
    02:49:36:CheckPrerequisites:         Logic Type:and    ADODotNetDataServicesHotfix-err: 0
    02:49:36:
    02:49:36:CheckPrerequisites:     ADO.NET Data Services Update check: Passed
    02:49:36:
    02:49:36:**************************************************
    02:49:36:
    02:49:36:**************************************************
    02:49:36:CheckPrerequisites: Checking Microsoft SQL Server 2008 Native Client check prereq.
    02:49:36:CheckPrerequisites:         Logic Type:and    SQLNCLI10-err: 0
    02:49:36:
    02:49:36:CheckPrerequisites:     Microsoft SQL Server 2008 Native Client check: Passed
    02:49:36:
    02:49:36:**************************************************
    02:49:37:CheckPrerequisites: Return Value 0
    02:49:39:Doing Pre-Upgrade checks...
    02:49:39:Validating database ServiceManagerNew on SQL Server TESTSER
    02:49:39:Validating SQL Instance TESTSER
    02:49:39:SQL Server: TESTSER
    02:49:39:SQL Server version: 10.50.1600.1
    02:49:39:Full text search installed: True
    02:49:39:Checking if '\administrator' is Sysadmin Or (SecurityAdmin And DbCreator) on SQL Instance TESTSER
    02:49:39:Stopping Service OMSDK on server
    02:49:39:Starting Service OMSDK on server
    02:49:41:Stopping Service OMCFG on server
    02:49:44:Starting Service OMCFG on server
    02:49:47:Validating Path C:\Program Files\Microsoft System Center\Service Manager 2010\
    02:49:47:Checking for available free disck space
    02:49:47:Checking directory write access
    02:49:47:*** Pre-Upgrade checks passed ***
    02:49:47:QuickFixEngineeringHandler: Unable to LoadQuickFixEngineeringFile.
    02:49:47:SetProgressScreen: StartMinorStep.
    02:49:47:statusUpdate: Resetting progress bar.
    02:49:47:ProcessInstalls: Install Item System Center Service Manager Install has a Preprocessing delegate of SystemCenterServiceManagerPreinstallProcessor.  Launching it now.
    02:49:47:SetProgressScreen: Init MSI Install progress.
    02:49:47:statusUpdate: Resetting progress bar.
    02:49:47:LaunchMsi: Msi mutex is not in use.
    02:49:47:LaunchMsi: MSI to launch is: c:\SCSM2012\amd64\Setup\Server\SM.msi.
    02:49:47:LaunchMsi: Turning off the internal UI for c:\SCSM2012\amd64\Setup\Server\SM.msi.
    02:49:47:LaunchMSI:  Enable logging for the MSI at C:\Users\administrator.\AppData\Local\Temp\2\\SCSMInstall02.log.
    02:49:47:LaunchMsi: MSI c:\SCSM2012\amd64\Setup\Server\SM.msi is not in silent mode.  Setting the external UI.
    02:49:47:LaunchMsi: Launching c:\SCSM2012\amd64\Setup\Server\SM.msi
    02:49:52:statusUpdate: Resetting progress bar for MSI: MaxValue 58857
    02:50:09:statusUpdate: Resetting progress bar for MSI: MaxValue 345710070
    02:50:09:Install Progress - (ProcessComponents) Updating component registration
    02:50:09:statusUpdate: Resetting progress bar for MSI: MaxValue 345710070
    02:50:10:Install Progress - (StopServices) Stopping services
    02:50:16:Install Progress - (_StopNamedServices_HealthService.80B659D9_F758_4E7D_B4FA_E53FC737DCC9) Stopping Health services
    02:50:17:Install Progress - (RemoveODBC) Removing ODBC components
    02:50:17:Install Progress - (RemoveFiles) Removing files
    02:50:17:Install Progress - (CreateFolders) Creating folders
    02:50:17:Install Progress - (InstallFiles) Copying new files
    02:50:30:Install Progress - (_CreateDatabase) Creating Database
    02:50:30:Install Progress - (_ExecuteSqlScripts) Configuring Database
    02:52:07:Install Progress - (ExecuteSqlStrings) Executing SQL Strings
    02:52:07:Install Progress - (CreateShortcuts) Creating shortcuts
    02:52:07:Install Progress - (WriteRegistryValues) Writing system registry values
    02:52:08:Install Progress - (_InstallServerPerfCounters.D2179E31_E456_401A_A820_CEBB135E3429) Installing Server Performance Counters
    02:52:12:Install Progress - (WriteEnvironmentStrings) Updating environment strings
    02:52:12:Install Progress - (_Rollback_UninstallBIDMOF.68918168_3885_4F75_BBF8_0CC84213F8D1) Rolling back BID MOF Installation
    02:52:23:Install Progress - (GenerateScript) Generating script operations for action:
    02:52:24:Install Progress - (_MPProcessorDeferred) Importing Management Packs
    02:52:25:Install Progress - (_ExecuteSqlScripts) Configuring Database
    02:52:26:Install Progress - (RegisterUser) Registering user
    02:52:26:Install Progress - (RegisterProduct) Registering product
    02:52:26:Install Progress - (PublishComponents) Publishing Qualified Components
    02:52:26:Install Progress - (MsiPublishAssemblies) Publishing assembly information
    02:52:26:Install Progress - (_ConfigureConfigService.D2179E31_E456_401A_A820_CEBB135E3429) Configure Config Service
    02:52:26:Install Progress - (_CreateInstanceQualityRelationship) Creating Default Instances, Qualities And There Relationships
    02:52:26:Install Progress - (PublishFeatures) Publishing product features
    02:52:26:Install Progress - (_StartNamedServices_HealthService.80B659D9_F758_4E7D_B4FA_E53FC737DCC9) Restarting Health Service
    02:52:26:Install Progress - (PublishProduct) Publishing product information
    02:52:26:statusUpdate: Resetting progress bar for MSI: MaxValue 177276452
    02:52:26:statusUpdate: Resetting progress bar for MSI: MaxValue 177276452
    02:57:32:statusUpdate: Resetting progress bar for MSI: MaxValue 177276452
    02:57:44:An error occurred while executing a custom action:_RegisterExtensionsDeferred
    Upgrade failed after making permanent changes to this management server. A disaster recovery procedure will be necessary to rebuild this machine before attempting upgrade again. Consult the User Guide to determine which action to take next.
    02:57:44:Install Progress - (Rollback) Rolling back action:
    02:57:44:statusUpdate: Resetting progress bar for MSI: MaxValue 177276452
    02:57:44:statusUpdate: Resetting progress bar for MSI: MaxValue 3
    02:57:44:Install Progress - (Rollback) Rolling back action:
    02:57:44:statusUpdate: Resetting progress bar for MSI: MaxValue 10525
    02:58:43:MsiInstallProduct finished for msi c:\SCSM2012\amd64\Setup\Server\SM.msi.
    02:58:43:LaunchMSI: Setting rollback to true
    02:58:43:LaunchMSI: MSI c:\SCSM2012\amd64\Setup\Server\SM.msi returned error 1603:Fatal error during installation
    02:58:43:ProcessInstalls: Install Item System Center Service Manager Install failed to install.  We did not launch the post process delegate.
    02:58:43:SetProgressScreen: FinishMinorStep.
    regards Sundaresan.C

    Jeremiah,
    We ran into this as well. One of two options:
    1.) Just run a repair on the SQL Server installation
    2.) Repair the WMI settings on the SQL Server as descibed here:
    http://social.technet.microsoft.com/Forums/en-US/systemcenterservicemanager/thread/2a91d03e-a685-495e-89ac-a591ec5871f6/
    bb

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