[SOLVED] /usr/share/aclocal/nspr.m4 exists in filesystem

pacman -Syu fails with this error:
error: failed to commit transaction (conflicting files)
nspr: /usr/share/aclocal/nspr.m4 exists in filesystem
Errors occurred, no packages were upgraded.
I found this thread, which suggested resyncing mirrors, but that didn't help.
Last edited by FreeAsInGimme (2013-08-03 14:21:14)

FYI: archlinux is widely known for our excellent wiki. Be sure to check there and search the forums before starting new threads. Many problems can be solved with a good search.
As a second FYI, I don't know if the use of the manjaro boards (linked in OP) was just a coincidence of what your previous search gave you or if you are using Manjaro. If it's the latter there are many differences between Manjaro and Archlinux. In this case they are similar enough to share a solution, but in other cases we would be unable to help you here. In short, if you are using Manjaro, be sure to ask on their forums if you have future problems.

Similar Messages

[SOLVED] Error "libpng12: /usr/lib/libpng.so.3 exists in filesystem".

I've just tried to install the stable "google-chrome" package from AUR with the command. I have all of the dependencies already installed except for these two:
- libjpeg6 (building from AUR)
- libpng12 (package found)
When the package manage tries to install "libpng12-1.2.43-1", I get the following error:
error: failed to commit transaction (conflicting files)
libpng12: /usr/lib/libpng.so.3 exists in filesystem
Errors occurred, no packages were upgraded.
According to the file manager (Thunar), the file /usr/lib/libpng.so.3 is a link to /usr/lib/libpng.so.
This is probably a silly question (as I'm a clueless newbie!) but... can I just delete this link and expect the installation of libpng12 to replace it so that everything will still work...?
Thanks in advance :-)
Last edited by esuhl (2011-01-21 02:46:19)

$ pacman -Ql libpng|grep /lib/
libpng /usr/lib/
libpng /usr/lib/libpng.a
libpng /usr/lib/libpng.so
libpng /usr/lib/libpng14.a
libpng /usr/lib/libpng14.so
libpng /usr/lib/libpng14.so.14
libpng /usr/lib/libpng14.so.14.5.0
libpng /usr/lib/pkgconfig/
libpng /usr/lib/pkgconfig/libpng.pc
libpng /usr/lib/pkgconfig/libpng14.pc
A tip: run pacman -Qo on the file in question, either you put that symlink there yourself or strange things are happening on your system.

[SOLVED] freeimage: /usr/lib/libfreeimage.so.3 exists in filesystem

Issue:
I can't upgrade.
$ pacman -Syu
error: failed to commit transaction (conflicting files)
freeimage: /usr/lib/libfreeimage.so.3 exists in filesystem
Errors occurred, no packages were upgraded
I check whether a package, possibly from AUR, is responsible:
# pacman -Qo
error: No package owns /usr/lib/libfreeimage.so.3
No.
Apparently this happened to other users as well. I was recommended the following solution:
$ pacman -Sf freeimage
Thanks to jelly1, Hattara-pilvi and Tucos of #archlinux!
Last edited by qubodup (2012-03-22 15:07:46)

$ pacman -Ql libpng|grep /lib/
libpng /usr/lib/
libpng /usr/lib/libpng.a
libpng /usr/lib/libpng.so
libpng /usr/lib/libpng14.a
libpng /usr/lib/libpng14.so
libpng /usr/lib/libpng14.so.14
libpng /usr/lib/libpng14.so.14.5.0
libpng /usr/lib/pkgconfig/
libpng /usr/lib/pkgconfig/libpng.pc
libpng /usr/lib/pkgconfig/libpng14.pc
A tip: run pacman -Qo on the file in question, either you put that symlink there yourself or strange things are happening on your system.

Nvidia-utils: /usr/lib/libXvMCNVIDIA_dynamic.so.1 exists in filesystem

FIXED NOW. REMOVED the CONFLICTING file. big deal.
Hello i just do my usual pacman -Syu and hit a problem with nvidia-utils package.
:: Starting full system upgrade...
resolving dependencies... done.
looking for inter-conflicts... done.
Targets: alunn-0.7.1.2-1 device-mapper-1.02.24-1 fakeroot-1.9-1 fuse-2.7.2-1 kazehakase-0.5.1-1 logrotate-3.7.5-1
lvm2-2.02.29-1 python-2.5.1-4 mutagen-1.13-1 ntfs-3g-1.1120-1 nvidia-utils-169.07-1 nvidia-169.07-1
roxterm-1.9.1-1 tcpdump-3.9.8-1
Total Package Size: 23.67 MB
Proceed with installation? [Y/n] Y
(14/14) checking for file conflicts [##############################################################] 100%
error: could not prepare transaction
error: failed to commit transaction (conflicting files)
nvidia-utils: /usr/lib/libXvMCNVIDIA_dynamic.so.1 exists in filesystem
errors occurred, no packages were upgraded.
Maybe just some minor problem, will se what i do with it later today.
!!Fixed now.
Not a big deal, tried to stop X and remove nvidia module but had to move or remove this file
/usr/lib/libXvMCNVIDIA_dynamic.so.1
to somewhere.
And upgrade of nvidia-utils finished fine then.
Last edited by Kaso_Da_Zmok (2008-01-08 11:16:53)

cell wrote:I read some where that the conflict comes when if you install with the script from nvidia.com and then reverse back to the driver from the repository.
Same happened to me.
I never installed anything manually, and I also had that issue.
So the explanation given in the link I gave above is more probable, at least in my case.
Otherwise, simply removing the conflicting file is in my opinion the easiest and safest way.

Having issues with /usr/lib/libfreeimageplus.so.3 exists in filesystem

Hello!
On sunday I did a pamcan -Suy and it fails showing:
error: failed to commit transaction (conflicting files)
freeimage: /usr/lib/libfreeimageplus.so.3 exists in filesystem
It is trying to install: Packages (9): farstream-0.1-0.1.2-4 freeimage-3.16.0-2 gnome-desktop-sharp-2.26.0-10
gtkhtml-sharp-2.26.0-9 [removal] gtksourceview2-sharp-2.26.0-10
libgnome-desktop-sharp-2.26.0-10 rsvg2-sharp-2.26.0-10 vte-sharp-2.26.0-10
wnck-sharp-2.26.0-10
And I did this:
pacman -Qo /usr/lib/libfreeimageplus.so.3
error: No package owns /usr/lib/libfreeimageplus.so.3
Any idea? what to do?

Luuuciano:
So, I'm having the same problem. I'm relatively new to Arch: I've just been using it a month or two, and I'm not entirely sure what the wiki is telling me to do when it says to "rename" the file. Would you please elaborate for me? I would really appreciate your help.
Thank you,
Corey Goettsch

Gpm: /usr/lib/libgpm.so.1 exists in filesystem

Hi all,
Ran pacman -Syu today and I get the following error: -
error: could not prepare transaction
error: failed to commit transaction (conflicting files)
gpm: /usr/lib/libgpm.so.1 exists in filesystem
Errors occurred, no packages were upgraded.
I tried a google search and a search of this forum but no results.
Any ideas?
Cheers
EmyrB

toofishes wrote:
dolby wrote:force the upgrade
man pacman
I hate blanket advice like this without explanation. Forcing is not usually a good idea. Why not something more like this:
Since there is only one file that is conflicting, you can manually delete it and then try the upgrade again. If there were quite a few files that conflicted, you should be sure you know what you are doing and then pacman -Sf just that one package, and then your normal -Sy will work fine.
i just rephrased what the maintainer of the package said on the mailing list http://archlinux.org/pipermail/arch-dev … 05907.html giving the two imo crucial pointers. users are responsible for maintaining their own system.

Kernel-headers: /usr/include/linux/ivtv.h exists in filesystem

can't update kernelheaders caus that file exist issue!
kernel-headers: /usr/include/linux/ivtv.h exists in filesystem

Find out which package it belongs to (pacman will do this for you), then report it on the bugtracker, if it hasn't already been reported.

Audiofile libxvmc libxdamage sysfsutils exists in filesystem [Solved]

I've done a pacman -Syu tonight, and I cannot get the above packages to update, getting lots of "exists in filesystem" errors. I'm not finding any info on these.
I had trouble with klibc but ultimately got it to update by updating all klibc* packages together, as someone suggested.
Last edited by timm (2009-05-27 02:50:31)

Here is what I get
##pacman -Syu
:: Starting full system upgrade...
resolving dependencies...
looking for inter-conflicts...
Targets (5): audiofile-0.2.6-4 libxdamage-1.1.1-2 libxinerama-1.0.3-2
libxvmc-1.0.4-2 sysfsutils-2.1.0-5
Total Download Size: 0.00 MB
Total Installed Size: 0.90 MB
Proceed with installation? [Y/n] y
checking package integrity...
(5/5) checking for file conflicts [#####################] 100%
error: could not prepare transaction
error: failed to commit transaction (conflicting files)
audiofile: /usr/bin/audiofile-config exists in filesystem
audiofile: /usr/bin/sfconvert exists in filesystem
audiofile: /usr/bin/sfinfo exists in filesystem
audiofile: /usr/include/af_vfs.h exists in filesystem
audiofile: /usr/include/audiofile.h exists in filesystem
audiofile: /usr/include/aupvlist.h exists in filesystem
audiofile: /usr/lib/libaudiofile.a exists in filesystem
audiofile: /usr/lib/libaudiofile.so exists in filesystem
audiofile: /usr/lib/libaudiofile.so.0 exists in filesystem
audiofile: /usr/lib/libaudiofile.so.0.0.2 exists in filesystem
audiofile: /usr/lib/pkgconfig/audiofile.pc exists in filesystem
audiofile: /usr/share/aclocal/audiofile.m4 exists in filesystem
libxdamage: /usr/include/X11/extensions/Xdamage.h exists in filesystem
libxdamage: /usr/lib/libXdamage.a exists in filesystem
libxdamage: /usr/lib/libXdamage.so exists in filesystem
libxdamage: /usr/lib/libXdamage.so.1 exists in filesystem
libxdamage: /usr/lib/libXdamage.so.1.1.0 exists in filesystem
libxdamage: /usr/lib/pkgconfig/xdamage.pc exists in filesystem
libxvmc: /usr/include/X11/extensions/XvMClib.h exists in filesystem
libxvmc: /usr/lib/libXvMC.a exists in filesystem
libxvmc: /usr/lib/libXvMC.so exists in filesystem
libxvmc: /usr/lib/libXvMC.so.1 exists in filesystem
libxvmc: /usr/lib/libXvMC.so.1.0.0 exists in filesystem
libxvmc: /usr/lib/libXvMCW.a exists in filesystem
libxvmc: /usr/lib/libXvMCW.so exists in filesystem
libxvmc: /usr/lib/libXvMCW.so.1 exists in filesystem
libxvmc: /usr/lib/libXvMCW.so.1.0.0 exists in filesystem
libxvmc: /usr/lib/pkgconfig/xvmc.pc exists in filesystem
sysfsutils: /lib/libsysfs.so.2 exists in filesystem
sysfsutils: /lib/libsysfs.so.2.0.1 exists in filesystem
sysfsutils: /usr/bin/dlist_test exists in filesystem
sysfsutils: /usr/bin/get_device exists in filesystem
sysfsutils: /usr/bin/get_driver exists in filesystem
sysfsutils: /usr/bin/get_module exists in filesystem
sysfsutils: /usr/bin/systool exists in filesystem
sysfsutils: /usr/include/sysfs/dlist.h exists in filesystem
sysfsutils: /usr/include/sysfs/libsysfs.h exists in filesystem
sysfsutils: /usr/lib/libsysfs.a exists in filesystem
sysfsutils: /usr/lib/libsysfs.so exists in filesystem
Errors occurred, no packages were upgraded.
I ran through a pacman -Qo on all the files listed as errors under audiofile, all show that no package owns them.
I will proceed to rename the files carrying the error and rerun pacman for the packages, see if everything is ok. If no further errors, will delete the packages. (Dug deeper into the forums to find this method...)
Last edited by timm (2009-05-19 02:25:47)

[SOLVED] jdk7-openjdk exists in filesystem when it's not installed

I'm having a problem updating the jdk7-openjdk package (jdk7-openjdk-7.u21_2.3.9-4). When I went to update via pacman, pacman replied that files existed in the filesystem. I removed the jdk and reinstalled, only to be told that the package still exists in the filesystem.
$ sudo pacman -S jdk7-openjdk
resolving dependencies...
looking for inter-conflicts...
Packages (1): jdk7-openjdk-7.u21_2.3.9-4
Total Installed Size: 19.34 MiB
:: Proceed with installation? [Y/n] y
(1/1) checking keys in keyring [##########################] 100%
(1/1) checking package integrity [##########################] 100%
(1/1) loading package files [##########################] 100%
(1/1) checking for file conflicts [##########################] 100%
error: failed to commit transaction (conflicting files)
jdk7-openjdk: /usr/bin/appletviewer exists in filesystem
jdk7-openjdk: /usr/bin/apt exists in filesystem
jdk7-openjdk: /usr/bin/extcheck exists in filesystem
jdk7-openjdk: /usr/bin/idlj exists in filesystem
jdk7-openjdk: /usr/bin/jar exists in filesystem
jdk7-openjdk: /usr/bin/jarsigner exists in filesystem
jdk7-openjdk: /usr/bin/javac exists in filesystem
jdk7-openjdk: /usr/bin/javadoc exists in filesystem
jdk7-openjdk: /usr/bin/javah exists in filesystem
jdk7-openjdk: /usr/bin/javap exists in filesystem
jdk7-openjdk: /usr/bin/jcmd exists in filesystem
jdk7-openjdk: /usr/bin/jconsole exists in filesystem
jdk7-openjdk: /usr/bin/jdb exists in filesystem
jdk7-openjdk: /usr/bin/jhat exists in filesystem
jdk7-openjdk: /usr/bin/jinfo exists in filesystem
jdk7-openjdk: /usr/bin/jmap exists in filesystem
jdk7-openjdk: /usr/bin/jps exists in filesystem
jdk7-openjdk: /usr/bin/jrunscript exists in filesystem
jdk7-openjdk: /usr/bin/jsadebugd exists in filesystem
jdk7-openjdk: /usr/bin/jstack exists in filesystem
jdk7-openjdk: /usr/bin/jstat exists in filesystem
jdk7-openjdk: /usr/bin/jstatd exists in filesystem
jdk7-openjdk: /usr/bin/native2ascii exists in filesystem
jdk7-openjdk: /usr/bin/rmic exists in filesystem
jdk7-openjdk: /usr/bin/schemagen exists in filesystem
jdk7-openjdk: /usr/bin/serialver exists in filesystem
jdk7-openjdk: /usr/bin/wsgen exists in filesystem
jdk7-openjdk: /usr/bin/wsimport exists in filesystem
jdk7-openjdk: /usr/bin/xjc exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/bin/appletviewer exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/bin/apt exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/bin/extcheck exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/bin/idlj exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/bin/jar exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/bin/jarsigner exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/bin/java exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/bin/java-rmi.cgi exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/bin/javac exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/bin/javadoc exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/bin/javah exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/bin/javap exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/bin/jcmd exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/bin/jconsole exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/bin/jdb exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/bin/jhat exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/bin/jinfo exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/bin/jmap exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/bin/jps exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/bin/jrunscript exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/bin/jsadebugd exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/bin/jstack exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/bin/jstat exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/bin/jstatd exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/bin/keytool exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/bin/native2ascii exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/bin/orbd exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/bin/pack200 exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/bin/policytool exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/bin/rmic exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/bin/rmid exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/bin/rmiregistry exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/bin/schemagen exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/bin/serialver exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/bin/servertool exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/bin/tnameserv exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/bin/unpack200 exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/bin/wsgen exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/bin/wsimport exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/bin/xjc exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/lib/ct.sym exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/lib/jconsole.jar exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/lib/sa-jdi.jar exists in filesystem
jdk7-openjdk: /usr/lib/jvm/java-7-openjdk/lib/tools.jar exists in filesystem
jdk7-openjdk: /usr/share/applications/jconsole.desktop exists in filesystem
jdk7-openjdk: /usr/share/man/ja/man1/appletviewer.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/ja/man1/apt.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/ja/man1/extcheck.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/ja/man1/idlj.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/ja/man1/jar.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/ja/man1/jarsigner.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/ja/man1/javac.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/ja/man1/javadoc.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/ja/man1/javah.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/ja/man1/javap.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/ja/man1/jcmd.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/ja/man1/jconsole.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/ja/man1/jdb.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/ja/man1/jhat.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/ja/man1/jinfo.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/ja/man1/jmap.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/ja/man1/jps.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/ja/man1/jrunscript.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/ja/man1/jsadebugd.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/ja/man1/jstack.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/ja/man1/jstat.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/ja/man1/jstatd.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/ja/man1/native2ascii.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/ja/man1/rmic.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/ja/man1/schemagen.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/ja/man1/serialver.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/ja/man1/wsgen.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/ja/man1/wsimport.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/ja/man1/xjc.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/man1/appletviewer.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/man1/apt.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/man1/extcheck.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/man1/idlj.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/man1/jar.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/man1/jarsigner.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/man1/javac.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/man1/javadoc.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/man1/javah.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/man1/javap.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/man1/jcmd.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/man1/jconsole.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/man1/jdb.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/man1/jhat.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/man1/jinfo.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/man1/jmap.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/man1/jps.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/man1/jrunscript.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/man1/jsadebugd.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/man1/jstack.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/man1/jstat.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/man1/jstatd.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/man1/native2ascii.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/man1/rmic.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/man1/schemagen.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/man1/serialver.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/man1/wsgen.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/man1/wsimport.1.gz exists in filesystem
jdk7-openjdk: /usr/share/man/man1/xjc.1.gz exists in filesystem
Errors occurred, no packages were upgraded.
$
But when I go to check if it's installed:
$ pacman -Q | grep jdk
jre7-openjdk 7.u21_2.3.9-4
jre7-openjdk-headless 7.u21_2.3.9-4
$
The JREs are there, but the JDK is not. So somehow it's installed and not installed at the same time. How do I tell pacman that the installed package is not installed when it says it's both installed and not installed? Pacman -Rdd does not work as it's not installed. Pacman -S doesn't work as it's installed.
Last edited by 12o (2013-05-20 17:06:08)

Thank you very much for your help. I greatly appreciate it. I only use pacman to upgrade, update, or remove anything. Even if the package is from the AUR; in which case I use the -U. In this case, I tried to install the JRE, JRE headless, and the JDK at the same time. All of the tanked, so I used the pacman -Rdd to remove the JDK package. That's when the trouble started.
If it's safe to use the --force command in this case, I'll try it.
**UPDATE**
Looks like using the --force option worked. When I run the previous command, I get:
$ pacman -Qo /usr/bin/appletviewer
/usr/bin/appletviewer is owned by jdk7-openjdk 7.u21_2.3.9-4
$
Thanks again for the help! I'll mark the thread 'solved'.
Last edited by 12o (2013-05-20 17:05:48)

Everything 'exists in filesystem' Errors occurred, no packages were up

Something like 260 package updates failed to same error.
Really do not want to use --force
Any ideas?
edObject/EmbeddedObject.odt exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/java/EmbedDocument/EmbeddedObject/EmbeddedObject.xcu exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/java/EmbedDocument/EmbeddedObject/Makefile exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/java/EmbedDocument/EmbeddedObject/OwnEmbeddedObject.components exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/java/EmbedDocument/EmbeddedObject/OwnEmbeddedObject.java exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/java/EmbedDocument/EmbeddedObject/OwnEmbeddedObjectFactory.java exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/java/MinimalComponent/BuildMinimalComponent.xml exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/java/MinimalComponent/Makefile exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/java/MinimalComponent/MinimalComponent.components exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/java/MinimalComponent/MinimalComponent.idl exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/java/MinimalComponent/MinimalComponent.java exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/java/MinimalComponent/TestMinimalComponent.java exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/java/PropertySet/Makefile exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/java/PropertySet/PropTest.components exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/java/PropertySet/PropTest.java exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/java/PropertySet/PropertySet.odt exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/java/Spreadsheet/CalcAddins.components exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/java/Spreadsheet/CalcAddins.java exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/java/Spreadsheet/CalcAddins.ods exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/java/Spreadsheet/ChartTypeChange.java exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/java/Spreadsheet/EuroAdaption.java exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/java/Spreadsheet/Makefile exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/java/Spreadsheet/SCalc.java exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/java/Spreadsheet/XCalcAddins.idl exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/java/Text/BookmarkInsertion.java exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/java/Text/GraphicsInserter.java exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/java/Text/HardFormatting.java exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/java/Text/Makefile exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/java/Text/SWriter.java exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/java/Text/StyleCreation.java exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/java/Text/StyleInitialization.java exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/java/Text/TextDocumentStructure.java exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/java/Text/TextReplace.java exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/java/Text/WriterSelector.java exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/java/Text/oo_smiley.gif exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/java/ToDo/Makefile exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/java/ToDo/ToDo.components exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/java/ToDo/ToDo.idl exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/java/ToDo/ToDo.java exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/java/ToDo/ToDo.ods exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/java/ToDo/XToDo.idl exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/python/toolpanel/CalcWindowState.xcu exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/python/toolpanel/Factory.xcu exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/python/toolpanel/META-INF/manifest.xml exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/python/toolpanel/Makefile exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/python/toolpanel/description.xml exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/python/toolpanel/readme exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/python/toolpanel/toolPanelPocBasic/Module1.xba exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/python/toolpanel/toolPanelPocBasic/dialog.xlb exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/python/toolpanel/toolPanelPocBasic/script.xlb exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/python/toolpanel/toolpanel.component exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/python/toolpanel/toolpanel.py exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/examples/python/toolpanel/toolpanels/poc.xdl exists in filesystem
libreoffice-sdk-doc: /usr/lib/libreoffice/sdk/index.html exists in filesystem
libreoffice-writer: /usr/lib/libreoffice/program/libhwplo.so exists in filesystem
libreoffice-writer: /usr/lib/libreoffice/program/liblwpftlo.so exists in filesystem
libreoffice-writer: /usr/lib/libreoffice/program/libmswordlo.so exists in filesystem
libreoffice-writer: /usr/lib/libreoffice/program/libmsworkslo.so exists in filesystem
libreoffice-writer: /usr/lib/libreoffice/program/libswdlo.so exists in filesystem
libreoffice-writer: /usr/lib/libreoffice/program/libswuilo.so exists in filesystem
libreoffice-writer: /usr/lib/libreoffice/program/libt602filterlo.so exists in filesystem
libreoffice-writer: /usr/lib/libreoffice/program/libwpftlo.so exists in filesystem
libreoffice-writer: /usr/lib/libreoffice/program/libwriterfilterlo.so exists in filesystem
libreoffice-writer: /usr/lib/libreoffice/share/registry/writer.xcd exists in filesystem
libxft: /usr/lib/libXft.so.2.3.0 exists in filesystem
linux-firmware: /lib/firmware/bnx2x/bnx2x-e1-7.2.16.0.fw exists in filesystem
linux-firmware: /lib/firmware/bnx2x/bnx2x-e1h-7.2.16.0.fw exists in filesystem
linux-firmware: /lib/firmware/bnx2x/bnx2x-e2-7.2.16.0.fw exists in filesystem
linux-firmware: /lib/firmware/brcm/brcmfmac43236b.bin exists in filesystem
linux-firmware: /lib/firmware/brcm/brcmfmac4329.bin exists in filesystem
linux-firmware: /lib/firmware/brcm/brcmfmac4330.bin exists in filesystem
linux-firmware: /lib/firmware/cxgb3/t3fw-7.12.0.bin exists in filesystem
linux-firmware: /lib/firmware/cxgb4/t4fw-1.4.16.0.bin exists in filesystem
linux-firmware: /lib/firmware/usbdux/usbduxsigma_firmware.asm exists in filesystem
linux-firmware: /lib/firmware/usbduxsigma_firmware.bin exists in filesystem
mkinitcpio-busybox: /usr/lib/initcpio/busybox exists in filesystem
mkinitcpio: /usr/lib/initcpio/functions exists in filesystem
mkinitcpio: /usr/lib/initcpio/hooks/btrfs exists in filesystem
mkinitcpio: /usr/lib/initcpio/hooks/consolefont exists in filesystem
mkinitcpio: /usr/lib/initcpio/hooks/keymap exists in filesystem
mkinitcpio: /usr/lib/initcpio/hooks/memdisk exists in filesystem
mkinitcpio: /usr/lib/initcpio/hooks/net exists in filesystem
mkinitcpio: /usr/lib/initcpio/hooks/resume exists in filesystem
mkinitcpio: /usr/lib/initcpio/hooks/shutdown exists in filesystem
mkinitcpio: /usr/lib/initcpio/hooks/sleep exists in filesystem
mkinitcpio: /usr/lib/initcpio/init exists in filesystem
mkinitcpio: /usr/lib/initcpio/init_functions exists in filesystem
mkinitcpio: /usr/lib/initcpio/install/autodetect exists in filesystem
mkinitcpio: /usr/lib/initcpio/install/base exists in filesystem
mkinitcpio: /usr/lib/initcpio/install/btrfs exists in filesystem
mkinitcpio: /usr/lib/initcpio/install/consolefont exists in filesystem
mkinitcpio: /usr/lib/initcpio/install/filesystems exists in filesystem
mkinitcpio: /usr/lib/initcpio/install/fsck exists in filesystem
mkinitcpio: /usr/lib/initcpio/install/fw exists in filesystem
mkinitcpio: /usr/lib/initcpio/install/ide exists in filesystem
mkinitcpio: /usr/lib/initcpio/install/keymap exists in filesystem
mkinitcpio: /usr/lib/initcpio/install/memdisk exists in filesystem
mkinitcpio: /usr/lib/initcpio/install/net exists in filesystem
mkinitcpio: /usr/lib/initcpio/install/pata exists in filesystem
mkinitcpio: /usr/lib/initcpio/install/pcmcia exists in filesystem
mkinitcpio: /usr/lib/initcpio/install/resume exists in filesystem
mkinitcpio: /usr/lib/initcpio/install/sata exists in filesystem
mkinitcpio: /usr/lib/initcpio/install/scsi exists in filesystem
mkinitcpio: /usr/lib/initcpio/install/shutdown exists in filesystem
mkinitcpio: /usr/lib/initcpio/install/sleep exists in filesystem
mkinitcpio: /usr/lib/initcpio/install/usb exists in filesystem
mkinitcpio: /usr/lib/initcpio/install/usbinput exists in filesystem
mkinitcpio: /usr/lib/initcpio/install/virtio exists in filesystem
mkinitcpio: /usr/lib/initcpio/shutdown exists in filesystem
mkinitcpio: /usr/lib/initcpio/udev/01-memdisk.rules exists in filesystem
man-db: /usr/lib/man-db/libman-2.6.1.so exists in filesystem
man-db: /usr/lib/man-db/libmandb-2.6.1.so exists in filesystem
man-pages: /usr/share/man/man1/getent.1.gz exists in filesystem
man-pages: /usr/share/man/man2/sendmmsg.2.gz exists in filesystem
mesa: /usr/include/xa_composite.h exists in filesystem
mesa: /usr/include/xa_context.h exists in filesystem
mesa: /usr/include/xa_tracker.h exists in filesystem
mesa: /usr/lib/libGLU.so.1.3.08000 exists in filesystem
mesa: /usr/lib/libxatracker.so exists in filesystem
mesa: /usr/lib/libxatracker.so.1 exists in filesystem
mesa: /usr/lib/libxatracker.so.1.0.0 exists in filesystem
mesa: /usr/lib/pkgconfig/xatracker.pc exists in filesystem
mx: /usr/lib/libmx-1.0.so.2.401.0 exists in filesystem
poppler-glib: /usr/share/gtk-doc/html/poppler/api-index-0-18.html exists in filesystem
shared-color-targets: /usr/share/color/targets/wolf_faust/reflective/R110714.it8 exists in filesystem
shared-color-targets: /usr/share/color/targets/wolf_faust/reflective/R110714WhiteBacking.it8 exists in filesystem
shared-color-targets: /usr/share/color/targets/wolf_faust/reflective/R110903.it8 exists in filesystem
shared-color-targets: /usr/share/color/targets/wolf_faust/reflective/R111204.it8 exists in filesystem
shared-color-targets: /usr/share/color/targets/wolf_faust/reflective/R111204WhiteBacking.it8 exists in filesystem
shared-color-targets: /usr/share/color/targets/wolf_faust/transmissive/A111011.it8 exists in filesystem
shared-color-targets: /usr/share/color/targets/wolf_faust/transmissive/A120115.it8 exists in filesystem
shared-color-targets: /usr/share/color/targets/wolf_faust/transmissive/E111007.it8 exists in filesystem
shared-color-targets: /usr/share/color/targets/wolf_faust/transmissive/E120104.it8 exists in filesystem
shared-color-targets: /usr/share/color/targets/wolf_faust/transmissive/F111224.it8 exists in filesystem
shared-color-targets: /usr/share/color/targets/wolf_faust/transmissive/N111122.it8 exists in filesystem
shared-color-targets: /usr/share/color/targets/wolf_faust/transmissive/N111125.it8 exists in filesystem
shared-color-targets: /usr/share/color/targets/wolf_faust/transmissive/N111203.it8 exists in filesystem
shared-color-targets: /usr/share/color/targets/wolf_faust/transmissive/V111010.it8 exists in filesystem
shared-color-targets: /usr/share/color/targets/wolf_faust/transmissive/V120101.it8 exists in filesystem
subversion: /usr/lib/httpd/modules/mod_dontdothat.so exists in filesystem
thunderbird: /usr/lib/thunderbird/isp/Bogofilter.sfd exists in filesystem
thunderbird: /usr/lib/thunderbird/isp/DSPAM.sfd exists in filesystem
thunderbird: /usr/lib/thunderbird/isp/POPFile.sfd exists in filesystem
libkate: /usr/bin/KateDJ exists in filesystem
libkate: /usr/bin/katalyzer exists in filesystem
libkate: /usr/bin/katedec exists in filesystem
libkate: /usr/bin/kateenc exists in filesystem
libkate: /usr/include/kate/kate.h exists in filesystem
libkate: /usr/include/kate/kate_config.h exists in filesystem
libkate: /usr/include/kate/oggkate.h exists in filesystem
libkate: /usr/lib/libkate.so exists in filesystem
libkate: /usr/lib/libkate.so.1 exists in filesystem
libkate: /usr/lib/libkate.so.1.3.0 exists in filesystem
libkate: /usr/lib/liboggkate.so exists in filesystem
libkate: /usr/lib/liboggkate.so.1 exists in filesystem
libkate: /usr/lib/liboggkate.so.1.2.2 exists in filesystem
libkate: /usr/lib/pkgconfig/kate.pc exists in filesystem
libkate: /usr/lib/pkgconfig/oggkate.pc exists in filesystem
libkate: /usr/lib/python2.7/site-packages/kdj/__init__.py exists in filesystem
libkate: /usr/lib/python2.7/site-packages/kdj/__init__.pyc exists in filesystem
libkate: /usr/lib/python2.7/site-packages/kdj/__init__.pyo exists in filesystem
libkate: /usr/lib/python2.7/site-packages/kdj/constants.py exists in filesystem
libkate: /usr/lib/python2.7/site-packages/kdj/constants.pyc exists in filesystem
libkate: /usr/lib/python2.7/site-packages/kdj/constants.pyo exists in filesystem
libkate: /usr/lib/python2.7/site-packages/kdj/demuxer.py exists in filesystem
libkate: /usr/lib/python2.7/site-packages/kdj/demuxer.pyc exists in filesystem
libkate: /usr/lib/python2.7/site-packages/kdj/demuxer.pyo exists in filesystem
libkate: /usr/lib/python2.7/site-packages/kdj/finder.py exists in filesystem
libkate: /usr/lib/python2.7/site-packages/kdj/finder.pyc exists in filesystem
libkate: /usr/lib/python2.7/site-packages/kdj/finder.pyo exists in filesystem
libkate: /usr/lib/python2.7/site-packages/kdj/muxer.py exists in filesystem
libkate: /usr/lib/python2.7/site-packages/kdj/muxer.pyc exists in filesystem
libkate: /usr/lib/python2.7/site-packages/kdj/muxer.pyo exists in filesystem
libkate: /usr/lib/python2.7/site-packages/kdj/options.py exists in filesystem
libkate: /usr/lib/python2.7/site-packages/kdj/options.pyc exists in filesystem
libkate: /usr/lib/python2.7/site-packages/kdj/options.pyo exists in filesystem
libkate: /usr/lib/python2.7/site-packages/kdj/tester.py exists in filesystem
libkate: /usr/lib/python2.7/site-packages/kdj/tester.pyc exists in filesystem
libkate: /usr/lib/python2.7/site-packages/kdj/tester.pyo exists in filesystem
libkate: /usr/lib/python2.7/site-packages/kdj/tools.py exists in filesystem
libkate: /usr/lib/python2.7/site-packages/kdj/tools.pyc exists in filesystem
libkate: /usr/lib/python2.7/site-packages/kdj/tools.pyo exists in filesystem
libkate: /usr/lib/python2.7/site-packages/kdj/ui_editor.py exists in filesystem
libkate: /usr/lib/python2.7/site-packages/kdj/ui_editor.pyc exists in filesystem
libkate: /usr/lib/python2.7/site-packages/kdj/ui_editor.pyo exists in filesystem
libkate: /usr/lib/python2.7/site-packages/kdj/ui_main.py exists in filesystem
libkate: /usr/lib/python2.7/site-packages/kdj/ui_main.pyc exists in filesystem
libkate: /usr/lib/python2.7/site-packages/kdj/ui_main.pyo exists in filesystem
libkate: /usr/lib/python2.7/site-packages/kdj/ui_options.py exists in filesystem
libkate: /usr/lib/python2.7/site-packages/kdj/ui_options.pyc exists in filesystem
libkate: /usr/lib/python2.7/site-packages/kdj/ui_options.pyo exists in filesystem
libkate: /usr/share/doc/libkate/AUTHORS exists in filesystem
libkate: /usr/share/doc/libkate/COPYING exists in filesystem
libkate: /usr/share/doc/libkate/ChangeLog exists in filesystem
libkate: /usr/share/doc/libkate/README exists in filesystem
libkate: /usr/share/doc/libkate/THANKS exists in filesystem
libkate: /usr/share/doc/libkate/html/Format.html exists in filesystem
libkate: /usr/share/doc/libkate/html/HOWTO.html exists in filesystem
libkate: /usr/share/doc/libkate/html/Support.html exists in filesystem
libkate: /usr/share/doc/libkate/html/annotated.html exists in filesystem
libkate: /usr/share/doc/libkate/html/categories.html exists in filesystem
libkate: /usr/share/doc/libkate/html/classes.html exists in filesystem
libkate: /usr/share/doc/libkate/html/config_8h-source.html exists in filesystem
libkate: /usr/share/doc/libkate/html/config_8h_source.html exists in filesystem
libkate: /usr/share/doc/libkate/html/decoding_8c-example.html exists in filesystem
libkate: /usr/share/doc/libkate/html/doxygen.css exists in filesystem
libkate: /usr/share/doc/libkate/html/doxygen.png exists in filesystem
libkate: /usr/share/doc/libkate/html/encoding_8c-example.html exists in filesystem
libkate: /usr/share/doc/libkate/html/errors.html exists in filesystem
libkate: /usr/share/doc/libkate/html/examples.html exists in filesystem
libkate: /usr/share/doc/libkate/html/files.html exists in filesystem
libkate: /usr/share/doc/libkate/html/format_0x00.html exists in filesystem
libkate: /usr/share/doc/libkate/html/format_0x01.html exists in filesystem
libkate: /usr/share/doc/libkate/html/format_0x7f.html exists in filesystem
libkate: /usr/share/doc/libkate/html/format_0x80.html exists in filesystem
libkate: /usr/share/doc/libkate/html/format_0x81.html exists in filesystem
libkate: /usr/share/doc/libkate/html/format_0x82.html exists in filesystem
libkate: /usr/share/doc/libkate/html/format_0x83.html exists in filesystem
libkate: /usr/share/doc/libkate/html/format_0x84.html exists in filesystem
libkate: /usr/share/doc/libkate/html/format_0x85.html exists in filesystem
libkate: /usr/share/doc/libkate/html/format_0x86.html exists in filesystem
libkate: /usr/share/doc/libkate/html/format_0x87.html exists in filesystem
libkate: /usr/share/doc/libkate/html/format_0x88.html exists in filesystem
libkate: /usr/share/doc/libkate/html/format_32v.html exists in filesystem
libkate: /usr/share/doc/libkate/html/format_bitmap.html exists in filesystem
libkate: /usr/share/doc/libkate/html/format_color.html exists in filesystem
libkate: /usr/share/doc/libkate/html/format_curve.html exists in filesystem
libkate: /usr/share/doc/libkate/html/format_font_range.html exists in filesystem
libkate: /usr/share/doc/libkate/html/format_fp.html exists in filesystem
libkate: /usr/share/doc/libkate/html/format_metadata.html exists in filesystem
libkate: /usr/share/doc/libkate/html/format_motion.html exists in filesystem
libkate: /usr/share/doc/libkate/html/format_palette.html exists in filesystem
libkate: /usr/share/doc/libkate/html/format_region.html exists in filesystem
libkate: /usr/share/doc/libkate/html/format_rle.html exists in filesystem
libkate: /usr/share/doc/libkate/html/format_style.html exists in filesystem
libkate: /usr/share/doc/libkate/html/format_warp.html exists in filesystem
libkate: /usr/share/doc/libkate/html/functions.html exists in filesystem
libkate: /usr/share/doc/libkate/html/functions_vars.html exists in filesystem
libkate: /usr/share/doc/libkate/html/globals.html exists in filesystem
libkate: /usr/share/doc/libkate/html/globals_0x63.html exists in filesystem
libkate: /usr/share/doc/libkate/html/globals_0x64.html exists in filesystem
libkate: /usr/share/doc/libkate/html/globals_0x65.html exists in filesystem
libkate: /usr/share/doc/libkate/html/globals_0x66.html exists in filesystem
libkate: /usr/share/doc/libkate/html/globals_0x67.html exists in filesystem
libkate: /usr/share/doc/libkate/html/globals_0x68.html exists in filesystem
libkate: /usr/share/doc/libkate/html/globals_0x69.html exists in filesystem
libkate: /usr/share/doc/libkate/html/globals_0x6c.html exists in filesystem
libkate: /usr/share/doc/libkate/html/globals_0x6d.html exists in filesystem
libkate: /usr/share/doc/libkate/html/globals_0x6f.html exists in filesystem
libkate: /usr/share/doc/libkate/html/globals_0x70.html exists in filesystem
libkate: /usr/share/doc/libkate/html/globals_0x72.html exists in filesystem
libkate: /usr/share/doc/libkate/html/globals_0x73.html exists in filesystem
libkate: /usr/share/doc/libkate/html/globals_0x74.html exists in filesystem
libkate: /usr/share/doc/libkate/html/globals_0x75.html exists in filesystem
libkate: /usr/share/doc/libkate/html/globals_0x76.html exists in filesystem
libkate: /usr/share/doc/libkate/html/globals_0x77.html exists in filesystem
libkate: /usr/share/doc/libkate/html/globals_defs.html exists in filesystem
libkate: /usr/share/doc/libkate/html/globals_enum.html exists in filesystem
libkate: /usr/share/doc/libkate/html/globals_eval.html exists in filesystem
libkate: /usr/share/doc/libkate/html/globals_func.html exists in filesystem
libkate: /usr/share/doc/libkate/html/granule.html exists in filesystem
libkate: /usr/share/doc/libkate/html/group__comments.html exists in filesystem
libkate: /usr/share/doc/libkate/html/group__decoding.html exists in filesystem
libkate: /usr/share/doc/libkate/html/group__encoding.html exists in filesystem
libkate: /usr/share/doc/libkate/html/group__font.html exists in filesystem
libkate: /usr/share/doc/libkate/html/group__granule.html exists in filesystem
libkate: /usr/share/doc/libkate/html/group__high.html exists in filesystem
libkate: /usr/share/doc/libkate/html/group__info.html exists in filesystem
libkate: /usr/share/doc/libkate/html/group__metadata.html exists in filesystem
libkate: /usr/share/doc/libkate/html/group__misc.html exists in filesystem
libkate: /usr/share/doc/libkate/html/group__ogg__decode.html exists in filesystem
libkate: /usr/share/doc/libkate/html/group__ogg__encode.html exists in filesystem
libkate: /usr/share/doc/libkate/html/group__packet.html exists in filesystem
libkate: /usr/share/doc/libkate/html/group__text.html exists in filesystem
libkate: /usr/share/doc/libkate/html/group__tracker.html exists in filesystem
libkate: /usr/share/doc/libkate/html/group__version.html exists in filesystem
libkate: /usr/share/doc/libkate/html/high_8c-example.html exists in filesystem
libkate: /usr/share/doc/libkate/html/index.html exists in filesystem
libkate: /usr/share/doc/libkate/html/kate_8c_source.html exists in filesystem
libkate: /usr/share/doc/libkate/html/kate_8h-source.html exists in filesystem
libkate: /usr/share/doc/libkate/html/kate_8h.html exists in filesystem
libkate: /usr/share/doc/libkate/html/kate_8h_source.html exists in filesystem
libkate: /usr/share/doc/libkate/html/kate__bitwise_8c_source.html exists in filesystem
libkate: /usr/share/doc/libkate/html/kate__bitwise_8h_source.html exists in filesystem
libkate: /usr/share/doc/libkate/html/kate__comment_8c_source.html exists in filesystem
libkate: /usr/share/doc/libkate/html/kate__config_8h-source.html exists in filesystem
libkate: /usr/share/doc/libkate/html/kate__config_8h_source.html exists in filesystem
libkate: /usr/share/doc/libkate/html/kate__decode_8c_source.html exists in filesystem
libkate: /usr/share/doc/libkate/html/kate__decode__state_8c_source.html exists in filesystem
libkate: /usr/share/doc/libkate/html/kate__decode__state_8h_source.html exists in filesystem
libkate: /usr/share/doc/libkate/html/kate__encode_8c_source.html exists in filesystem
libkate: /usr/share/doc/libkate/html/kate__encode__state_8c_source.html exists in filesystem
libkate: /usr/share/doc/libkate/html/kate__encode__state_8h_source.html exists in filesystem
libkate: /usr/share/doc/libkate/html/kate__event_8c_source.html exists in filesystem
libkate: /usr/share/doc/libkate/html/kate__font_8c_source.html exists in filesystem
libkate: /usr/share/doc/libkate/html/kate__fp_8c_source.html exists in filesystem
libkate: /usr/share/doc/libkate/html/kate__fp_8h_source.html exists in filesystem
libkate: /usr/share/doc/libkate/html/kate__granule_8c_source.html exists in filesystem
libkate: /usr/share/doc/libkate/html/kate__high_8c_source.html exists in filesystem
libkate: /usr/share/doc/libkate/html/kate__info_8c_source.html exists in filesystem
libkate: /usr/share/doc/libkate/html/kate__internal_8h_source.html exists in filesystem
libkate: /usr/share/doc/libkate/html/kate__motion_8c_source.html exists in filesystem
libkate: /usr/share/doc/libkate/html/kate__ogg_8c_source.html exists in filesystem
libkate: /usr/share/doc/libkate/html/kate__packet_8c_source.html exists in filesystem
libkate: /usr/share/doc/libkate/html/kate__rle_8c_source.html exists in filesystem
libkate: /usr/share/doc/libkate/html/kate__rle_8h_source.html exists in filesystem
libkate: /usr/share/doc/libkate/html/kate__text_8c_source.html exists in filesystem
libkate: /usr/share/doc/libkate/html/kate__tracker_8c_source.html exists in filesystem
libkate: /usr/share/doc/libkate/html/modules.html exists in filesystem
libkate: /usr/share/doc/libkate/html/oggkate_8h-source.html exists in filesystem
libkate: /usr/share/doc/libkate/html/oggkate_8h.html exists in filesystem
libkate: /usr/share/doc/libkate/html/oggkate_8h_source.html exists in filesystem
libkate: /usr/share/doc/libkate/html/pages.html exists in filesystem
libkate: /usr/share/doc/libkate/html/structkate__active__event.html exists in filesystem
libkate: /usr/share/doc/libkate/html/structkate__bitmap.html exists in filesystem
libkate: /usr/share/doc/libkate/html/structkate__color.html exists in filesystem
libkate: /usr/share/doc/libkate/html/structkate__comment.html exists in filesystem
libkate: /usr/share/doc/libkate/html/structkate__curve.html exists in filesystem
libkate: /usr/share/doc/libkate/html/structkate__decode__state.html exists in filesystem
libkate: /usr/share/doc/libkate/html/structkate__encode__state.html exists in filesystem
libkate: /usr/share/doc/libkate/html/structkate__event.html exists in filesystem
libkate: /usr/share/doc/libkate/html/structkate__event__timing.html exists in filesystem
libkate: /usr/share/doc/libkate/html/structkate__font__mapping.html exists in filesystem
libkate: /usr/share/doc/libkate/html/structkate__font__range.html exists in filesystem
libkate: /usr/share/doc/libkate/html/structkate__info.html exists in filesystem
libkate: /usr/share/doc/libkate/html/structkate__memory__guard.html exists in filesystem
libkate: /usr/share/doc/libkate/html/structkate__motion.html exists in filesystem
libkate: /usr/share/doc/libkate/html/structkate__pack__buffer.html exists in filesystem
libkate: /usr/share/doc/libkate/html/structkate__packet.html exists in filesystem
libkate: /usr/share/doc/libkate/html/structkate__palette.html exists in filesystem
libkate: /usr/share/doc/libkate/html/structkate__region.html exists in filesystem
libkate: /usr/share/doc/libkate/html/structkate__state.html exists in filesystem
libkate: /usr/share/doc/libkate/html/structkate__style.html exists in filesystem
libkate: /usr/share/doc/libkate/html/structkate__tracker.html exists in filesystem
libkate: /usr/share/doc/libkate/html/structkate__tracker__internal.html exists in filesystem
libkate: /usr/share/doc/libkate/html/tab_b.gif exists in filesystem
libkate: /usr/share/doc/libkate/html/tab_l.gif exists in filesystem
libkate: /usr/share/doc/libkate/html/tab_r.gif exists in filesystem
libkate: /usr/share/doc/libkate/html/tabs.css exists in filesystem
libkate: /usr/share/licenses/libkate/LICENSE exists in filesystem
libkate: /usr/share/man/man1/KateDJ.1.gz exists in filesystem
libkate: /usr/share/man/man1/katalyzer.1.gz exists in filesystem
libkate: /usr/share/man/man1/katedec.1.gz exists in filesystem
libkate: /usr/share/man/man1/kateenc.1.gz exists in filesystem
libtiger: /usr/include/tiger/tiger.h exists in filesystem
libtiger: /usr/include/tiger/tiger_config.h exists in filesystem
libtiger: /usr/lib/libtiger.so exists in filesystem
libtiger: /usr/lib/libtiger.so.5 exists in filesystem
libtiger: /usr/lib/libtiger.so.5.0.2 exists in filesystem
libtiger: /usr/lib/pkgconfig/tiger.pc exists in filesystem
vlc: /usr/bin/svlc exists in filesystem
vlc: /usr/lib/vlc/plugins/access/libaccess_gnomevfs_plugin.so exists in filesystem
vlc: /usr/lib/vlc/plugins/access/libvcdx_plugin.so exists in filesystem
vlc: /usr/lib/vlc/plugins/audio_output/libportaudio_plugin.so exists in filesystem
vlc: /usr/lib/vlc/plugins/codec/libkate_plugin.so exists in filesystem
vlc: /usr/lib/vlc/plugins/codec/libtwolame_plugin.so exists in filesystem
vlc: /usr/lib/vlc/plugins/demux/libgme_plugin.so exists in filesystem
vlc: /usr/lib/vlc/plugins/gui/libskins2_plugin.so exists in filesystem
vlc: /usr/lib/vlc/plugins/notify/libnotify_plugin.so exists in filesystem
vlc: /usr/lib/vlc/plugins/notify/libxosd_plugin.so exists in filesystem
vlc: /usr/lib/vlc/plugins/text_renderer/libsvg_plugin.so exists in filesystem
vlc: /usr/lib/vlc/plugins/video_output/libaa_plugin.so exists in filesystem
vlc: /usr/lib/vlc/plugins/visualization/libgoom_plugin.so exists in filesystem
vlc: /usr/lib/vlc/plugins/visualization/libprojectm_plugin.so exists in filesystem
vlc: /usr/share/vlc/skins2/default.vlt exists in filesystem
vlc: /usr/share/vlc/skins2/fonts/FreeSans.ttf exists in filesystem
vlc: /usr/share/vlc/skins2/fonts/FreeSansBold.ttf exists in filesystem
vlc: /usr/share/vlc/skins2/skin.catalog exists in filesystem
vlc: /usr/share/vlc/skins2/skin.dtd exists in filesystem
vlc: /usr/share/vlc/skins2/winamp2.xml exists in filesystem
mtdev: /usr/bin/mtdev-test exists in filesystem
mtdev: /usr/include/mtdev-mapping.h exists in filesystem
mtdev: /usr/include/mtdev-plumbing.h exists in filesystem
mtdev: /usr/include/mtdev.h exists in filesystem
mtdev: /usr/lib/libmtdev.so exists in filesystem
mtdev: /usr/lib/libmtdev.so.1 exists in filesystem
mtdev: /usr/lib/libmtdev.so.1.0.0 exists in filesystem
mtdev: /usr/lib/pkgconfig/mtdev.pc exists in filesystem
mtdev: /usr/share/licenses/mtdev/LICENSE exists in filesystem
Errors occurred, no packages were upgraded.
Here is the 299 pkg updates
root@clc ~]# pacman -Syu
:: Synchronizing package databases...
core 103.4 KiB 131K/s 00:01 [######################] 100%
extra 1382.7 KiB 334K/s 00:04 [######################] 100%
community 1639.9 KiB 328K/s 00:05 [######################] 100%
:: Starting full system upgrade...
:: Replace gnupg2 with core/gnupg? [Y/n] y
resolving dependencies...
warning: dependency cycle detected:
warning: udev will be installed before its util-linux dependency
warning: dependency cycle detected:
warning: rhino will be installed before its jre7-openjdk-headless dependency
looking for inter-conflicts...
Targets (299): akonadi-1.7.1-1 avahi-0.6.31-1 bash-4.2.024-2 binutils-2.22-5
bluez-4.99-1 boost-libs-1.49.0-1.1 busybox-1.19.4-1
ca-certificates-java-20120225-1 cifs-utils-5.3-2
colord-0.1.17-1 coreutils-8.16-2 curl-7.25.0-1
damageproto-1.2.1-2 device-mapper-2.02.95-1 dhcpcd-5.5.6-1
dmxproto-2.3.1-2 dnsutils-9.9.0-1 docbook-xml-4.5-5
e2fsprogs-1.42.1-1 ekiga-3.3.2-3 exempi-2.2.0-1 expat-2.1.0-1
ffmpeg-20120317-1 fftw-3.3.1-1 file-5.11-1 firefox-11.0-2
fixesproto-5.0-2 flashplugin-11.2.202.228-1 fluidsynth-1.1.5-2
fontconfig-2.8.0-2 fontsproto-2.1.2-1 freetype2-2.4.9-2
gcc-4.7.0-3 gcc-libs-4.7.0-3 gconf-editor-3.0.0-2
giflib-4.1.6-5 git-1.7.9.6-1 glibc-2.15-10 glproto-1.4.15-1
gmime-2.6.7-1 gnome-desktop-1:3.2.1-1 gnome-mime-data-2.18.0-6
gnupg-2.0.19-1 gnupg2-2.0.18-1 [removal] gnutls-3.0.17-1
gpgme-1.3.1-4 grep-2.11-2 gstreamer0.10-0.10.36-1
gstreamer0.10-bad-0.10.23-1 gstreamer0.10-base-0.10.36-1
gstreamer0.10-base-plugins-0.10.36-1
gstreamer0.10-good-0.10.31-1
gstreamer0.10-good-plugins-0.10.31-1
gtk-update-icon-cache-2.24.10-3 gtk2-2.24.10-3 gtk3-3.2.3-3
guile-1.8.8-2 gvfs-1.10.1-3 gvfs-obexftp-1.10.1-3
gvim-7.3.475-1 hspell-1.1-2 hsqldb-java-1:1.8.0.10-2
initscripts-2012.03.2-1 inputproto-2.2-1 intel-dri-8.0.2-1
iproute2-3.2.0-3 jdk7-openjdk-7.b147_2.1-3
jre7-openjdk-7.b147_2.1-3 jre7-openjdk-headless-7.b147_2.1-3
kactivities-4.8.2-1 kbproto-1.0.6-1 kde-l10n-en_gb-4.8.2-1
kde-wallpapers-4.8.2-1 kdebase-dolphin-4.8.2-1
kdebase-katepart-4.8.2-1 kdebase-kdepasswd-4.8.2-1
kdebase-kdialog-4.8.2-1 kdebase-keditbookmarks-4.8.2-1
kdebase-kfind-4.8.2-1 kdebase-konq-plugins-4.8.2-1
kdebase-konqueror-4.8.2-1 kdebase-konsole-4.8.2-2
kdebase-kwrite-4.8.2-1 kdebase-lib-4.8.2-1
kdebase-plasma-4.8.2-1 kdebase-runtime-4.8.2-1
kdebase-workspace-4.8.2-2 kdelibs-4.8.2-1
kdepim-runtime-4.8.2-2 kdepimlibs-4.8.2-1
khrplatform-devel-8.0.2-1 kmod-7-1 krb5-1.10.1-2
lame-3.99.5-1 libarchive-3.0.4-1 libbonobo-2.32.1-2
libcdio-0.83-1 libcroco-0.6.4-1 libdmx-1.1.2-1
libdrm-2.4.33-1 libedit-20120311_3.0-1 libegl-8.0.2-1
libevent-2.0.17-1 libexif-0.6.20-2 libfontenc-1.1.1-1
libgl-8.0.2-1 libglade-2.6.4-3 libglapi-8.0.2-1
libgles-8.0.2-1 libgnome-2.32.1-3 libgnome-data-2.32.1-3
libgphoto2-2.4.13-1 libice-1.0.8-1 libiodbc-3.52.8-1
libkate-0.4.1-3 libldap-2.4.30-1 libltdl-2.4.2-5
libmtp-1.1.2-1 libmusicbrainz3-3.0.3-2 libmysqlclient-5.5.22-1
libnl-3.2.7-1 libnotify-0.7.5-1 libpcap-1.2.1-2
libpciaccess-0.13-1 libpng-1.5.10-1 libpst-0.6.54-1
libreoffice-base-3.5.1-1 libreoffice-calc-3.5.1-1
libreoffice-common-3.5.1-1 libreoffice-draw-3.5.1-1
libreoffice-en-US-3.5.1-1 libreoffice-gnome-3.5.1-1
libreoffice-impress-3.5.1-1 libreoffice-kde4-3.5.1-1
libreoffice-math-3.5.1-1 libreoffice-sdk-3.5.1-1
libreoffice-sdk-doc-3.5.1-1 libreoffice-writer-3.5.1-1
libsigc++-2.2.10-2 libsm-1.2.1-1 libsocialweb-0.25.20-0
libspectre-0.2.6-3 libtasn1-2.12-1 libtextcat-2.2-9
libtiff-4.0.1-1 libtiger-0.3.4-3 libtool-2.4.2-5
libupnp-1.6.16-1 libwbclient-3.6.3-4 libwpd-0.9.2-2
libwps-0.2.2-2 libx11-1.4.99.901-1 libxau-1.0.7-1
libxaw-1.0.10-1 libxcb-1.8.1-1 libxcomposite-0.4.3-2
libxcursor-1.1.13-1 libxdmcp-1.1.1-1 libxext-1.3.1-1
libxfixes-5.0-2 libxfont-1.4.5-1 libxft-2.3.0-2 libxi-1.6.0-1
libxinerama-1.1.2-1 libxkbfile-1.0.8-1 libxklavier-5.1-2
libxmu-1.1.1-1 libxpm-3.5.10-1 libxrender-0.9.7-1
libxres-1.0.6-1 libxss-1.2.2-1 libxt-1.1.3-1 libxtst-1.2.1-1
libxv-1.0.7-1 libxvmc-1.0.7-1 libxxf86dga-1.1.3-1
libxxf86vm-1.1.2-1 libyaml-0.1.4-2 linux-3.2.13-1
linux-api-headers-3.3-1 linux-docs-3.2.13-1
linux-firmware-20120227-1 linux-headers-3.2.13-1
lm_sensors-3.3.2-1 lpsolve-5.5.2.0-2 lua-5.1.5-1
lvm2-2.02.95-1 man-db-2.6.1-1 man-pages-3.37-1 mesa-8.0.2-1
mkinitcpio-0.8.5-1 mkinitcpio-busybox-1.19.4-2 mpfr-3.1.0.p7-1
mtdev-1.1.2-1 mx-1.4.3-1 mysql-5.5.22-1
mysql-clients-5.5.22-1 neon-0.29.6-4 net-snmp-5.7.1-2
networkmanager-0.9.2.0-3 nfs-utils-1.2.5-2
notification-daemon-0.7.4-1 nouveau-dri-8.0.2-1 nspr-4.9-1
nss-3.13.3-1 opencore-amr-0.1.3-1 openssh-5.9p1-8
openssl-1.0.1-2 orbit2-2.14.19-2 oxygen-icons-4.8.2-1
p11-kit-0.12-1 parted-3.1-1 pcmciautils-018-2
perl-xml-parser-2.41-2 perl-xml-simple-2.18-4 poppler-0.18.4-1
poppler-glib-0.18.4-1 ppl-0.12-1 psmisc-22.16-1
ptlib-2.10.2-2 python-pexpect-2.3-6 qrencode-3.3.0-1
qt-4.8.1-1 randrproto-1.3.2-2 raptor-2.0.7-1 recode-3.6-7
recordproto-1.14.2-1 renderproto-0.11.1-2 rhino-1.7R3-2
ruby-1.9.3_p125-3 sane-1.0.22-7 scrnsaverproto-1.2.2-1
sdl_ttf-2.0.11-2 shadow-4.1.5-4 shared-color-targets-0.1.1-1
smbclient-3.6.3-4 soprano-2.7.5-1 sound-juicer-2.32.1-2
sqlite3-3.7.11-1 subversion-1.7.4-1 sudo-1.8.4.p4-1
syslog-ng-3.3.4-4 taglib-1.7.1-1 thunderbird-11.0.1-1
ttf-dejavu-2.33-2 tzdata-2012b-3 udev-181-5 udisks-1.0.4-2
usbutils-005-1 util-linux-2.21-6 videoproto-2.3.1-2
vim-runtime-7.3.475-1 vlc-2.0.1-1 whois-5.0.15-1
wpa_actiond-1.2-1 wpa_supplicant-0.7.3-5 xbitmaps-1.1.1-2
xcb-proto-1.7.1-1 xextproto-7.2.1-1 xf86-input-evdev-2.7.0-2
xf86-input-synaptics-1.5.99.902-1 xf86-video-intel-2.18.0-1
xf86-video-nouveau-0.0.16_git20120210-1
xf86vidmodeproto-2.3.1-2 xineramaproto-1.2.1-2
xorg-bdftopcf-1.0.3-2 xorg-font-util-1.3.0-1
xorg-font-utils-7.6-3 xorg-fonts-encodings-1.0.4-3
xorg-luit-1.1.1-1 xorg-server-1.12.0.901-1
xorg-server-common-1.12.0.901-1 xorg-server-utils-7.6-3
xorg-setxkbmap-1.3.0-1 xorg-utils-7.6-8 xorg-xauth-1.0.7-1
xorg-xbacklight-1.1.2-3 xorg-xcursorgen-1.0.5-1
xorg-xdriinfo-1.0.4-3 xorg-xev-1.2.0-1 xorg-xgamma-1.0.5-1
xorg-xhost-1.0.5-1 xorg-xinput-1.5.99.1-1 xorg-xkbcomp-1.2.4-1
xorg-xkbevd-1.1.3-1 xorg-xkbutils-1.0.3-3 xorg-xkill-1.0.3-3
xorg-xlsatoms-1.1.1-1 xorg-xlsclients-1.1.2-2
xorg-xmodmap-1.0.6-1 xorg-xpr-1.0.4-1 xorg-xrdb-1.0.9-2
xorg-xrefresh-1.0.4-3 xorg-xsetroot-1.1.0-3
xorg-xvinfo-1.1.1-3 xorg-xwd-1.0.5-2 xorg-xwud-1.0.4-1
xproto-7.0.23-1 xz-5.0.3-2
Total Download Size: 160.85 MiB
Total Installed Size: 2291.87 MiB
Net Upgrade Size: 101.97 MiB
Proceed with installation? [Y/n] y
Last edited by killnine (2012-04-05 14:17:33)

karol wrote:
You can check if the 'files' file has the files that are causing errors, e.g.
[karol@black ~]$ grep "usr/lib/httpd/modules/mod_dontdothat.so" $(find /var/lib/pacman/local -name "subversion-*")/files
usr/lib/httpd/modules/mod_dontdothat.so
but I think there's something else going on.
I've noticed all of the errors concern files from /usr. Do you have some special setup, like a separate /usr partition?
[root@clc ~]# fdisk -l
Disk /dev/sda: 750.2 GB, 750156374016 bytes
255 heads, 63 sectors/track, 91201 cylinders, total 1465149168 sectors
Units = sectors of 1 * 512 = 512 bytes
Sector size (logical/physical): 512 bytes / 4096 bytes
I/O size (minimum/optimal): 4096 bytes / 4096 bytes
Disk identifier: 0x07f2837e
Device Boot Start End Blocks Id System
/dev/sda1 63 208844 104391 de Dell Utility
Partition 1 does not start on physical sector boundary.
/dev/sda2 * 212992 41172991 20480000 7 HPFS/NTFS/exFAT
/dev/sda3 41172992 1255431919 607129464 7 HPFS/NTFS/exFAT
/dev/sda4 1255431920 1451440984 98004532+ 5 Extended
/dev/sda5 1255431983 1287433399 16000708+ 83 Linux
Partition 5 does not start on physical sector boundary.
/dev/sda6 1287433463 1303434139 8000338+ 83 Linux
Partition 6 does not start on physical sector boundary.
/dev/sda7 1303434203 1451440984 74003391 83 Linux
Partition 7 does not start on physical sector boundary.
[root@clc ~]# mount
/dev/sda5 on / type ext4 (rw,relatime,user_xattr,acl,barrier=1,data=ordered)
proc on /proc type proc (rw,nosuid,nodev,noexec,relatime)
sys on /sys type sysfs (rw,nosuid,nodev,noexec,relatime)
run on /run type tmpfs (rw,nosuid,nodev,relatime,mode=755)
/dev on /dev type devtmpfs (rw,nosuid,relatime,size=4033576k,nr_inodes=1008394,mode=755)
devpts on /dev/pts type devpts (rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=000)
shm on /dev/shm type tmpfs (rw,nosuid,nodev,relatime)
tmpfs on /tmp type tmpfs (rw,nosuid,nodev,relatime)
/dev/sda7 on /home type ext4 (rw,relatime,user_xattr,acl,barrier=1,data=ordered)
/dev/sda6 on /var type ext4 (rw,relatime,user_xattr,acl,barrier=1,data=ordered)
gvfs-fuse-daemon on /root/.gvfs type fuse.gvfs-fuse-daemon (rw,nosuid,nodev,relatime,user_id=0,group_id=0)
[root@clc ~]# cat /etc/fstab
# /etc/fstab: static file system information
# <file system> <dir> <type> <options> <dump> <pass>
tmpfs /tmp tmpfs nodev,nosuid 0 0
LABEL=home /home ext4 defaults 0 1
LABEL=root / ext4 defaults 0 1
LABEL=var /var ext4 defaults 0 1

Pacman -Syu error, `file exist in filesystem`

I don't know how to solve this problem.
Here is my log :
> sudo pacman -Syu
:: Synchronizing package databases...
core is up to date
extra is up to date
community is up to date
multilib-testing is up to date
:: Starting full system upgrade...
resolving dependencies...
looking for inter-conflicts...
Targets (76): aria2-1.16.5-1 ati-dri-9.1.1-1 boost-1.53.0-2 boost-libs-1.53.0-2 chromium-26.0.1410.43-2 colord-0.1.31-1 cups-1.6.2-1 cups-filters-1.0.31-1 diffutils-3.3-1 dnssec-anchors-20130320-1 dnsutils-9.9.2.P2-1 dotconf-1.3-3 emacs-24.3-1 erlang-R16B-3 evas_generic_loaders-1.7.5-3 fcitx-4.2.7-5 fcitx-gtk2-4.2.7-5 fcitx-gtk3-4.2.7-5 fcitx-qt4-4.2.7-5 ffmpeg-1:1.2-2 file-5.14-1 gnome-common-3.7.4-1 gnutls-3.1.10-1 go-2:1.0.3-7 graphviz-2.30.1-2 gvim-7.3.875-1 harfbuzz-0.9.14-1 icu-51.1-1 imagemagick-6.8.4.0-1 intel-dri-9.1.1-1 libcups-1.6.2-1 libdrm-2.4.43-1 libffi-3.0.13-1 libgcrypt-1.5.1-1 libmysqlclient-5.5.30-7 libpulse-3.0-3 libreoffice-en-US-4.0.1-5 librime-0.9.8-2 libsasl-2.1.23-10 libwebp-0.2.1-1 libxkbcommon-0.3.0-1 linux-3.8.4-1 linux-headers-3.8.4-1 mesa-9.1.1-1 mesa-libgl-9.1.1-1 mysql-5.5.30-7 mysql++-3.1.0-4 mysql-clients-5.5.30-7 ncurses-5.9-5 nginx-1.2.7-5 nouveau-dri-9.1.1-1 openssh-6.2p1-1 pacman-mirrorlist-20130323-1 poppler-0.22.2-1 procps-ng-3.3.7-1 python-xdg-0.25-1 qt4-4.8.4-16 raptor-2.0.9-2 redis-2.6.12-1 ruby-2.0.0_p0-1 rxvt-unicode-9.18-1 sbt-0.13-1 shadow-4.1.5.1-5 speech-dispatcher-0.8-1 sqlite-3.7.16.1-1 systemd-198-2 systemd-sysvcompat-198-2 vim-runtime-7.3.875-1 virtualbox-guest-utils-4.2.10-2 wayland-1.0.6-1 wxgtk2.9-2.9.4-2 xf86-input-evdev-2.8.0-1 xf86-video-intel-2.21.5-1 xf86-video-nouveau-1.0.7-1 xmlrpc-c-1:1.33.03-1 xproto-7.0.24-1
Total Installed Size: 1592.59 MiB
Net Upgrade Size: 16.43 MiB
Proceed with installation? [Y/n]
checking package integrity...
loading package files...
checking for file conflicts...
ncurses: /usr/bin/captoinfo exists in filesystem
ncurses: /usr/bin/clear exists in filesystem
ncurses: /usr/bin/infocmp exists in filesystem
ncurses: /usr/bin/infotocap exists in filesystem
ncurses: /usr/bin/ncursesw5-config exists in filesystem
ncurses: /usr/bin/reset exists in filesystem
ncurses: /usr/bin/tabs exists in filesystem
ncurses: /usr/bin/tic exists in filesystem
ncurses: /usr/bin/toe exists in filesystem
ncurses: /usr/bin/tput exists in filesystem
ncurses: /usr/bin/tset exists in filesystem
ncurses: /usr/include/curses.h exists in filesystem
ncurses: /usr/include/cursesapp.h exists in filesystem
ncurses: /usr/include/cursesf.h exists in filesystem
ncurses: /usr/include/cursesm.h exists in filesystem
ncurses: /usr/include/cursesp.h exists in filesystem
ncurses: /usr/include/cursesw.h exists in filesystem
ncurses: /usr/include/cursslk.h exists in filesystem
ncurses: /usr/include/eti.h exists in filesystem
ncurses: /usr/include/etip.h exists in filesystem
ncurses: /usr/include/form.h exists in filesystem
ncurses: /usr/include/menu.h exists in filesystem
ncurses: /usr/include/nc_tparm.h exists in filesystem
ncurses: /usr/include/ncurses.h exists in filesystem
ncurses: /usr/include/ncurses_dll.h exists in filesystem
ncurses: /usr/include/panel.h exists in filesystem
ncurses: /usr/include/term.h exists in filesystem
ncurses: /usr/include/term_entry.h exists in filesystem
ncurses: /usr/include/termcap.h exists in filesystem
ncurses: /usr/include/tic.h exists in filesystem
ncurses: /usr/include/unctrl.h exists in filesystem
ncurses: /usr/lib/libcurses.a exists in filesystem
ncurses: /usr/lib/libcurses.so exists in filesystem
ncurses: /usr/lib/libcursesw.a exists in filesystem
ncurses: /usr/lib/libcursesw.so exists in filesystem
ncurses: /usr/lib/libform.a exists in filesystem
ncurses: /usr/lib/libform.so exists in filesystem
ncurses: /usr/lib/libformw.a exists in filesystem
ncurses: /usr/lib/libformw.so exists in filesystem
ncurses: /usr/lib/libformw.so.5 exists in filesystem
ncurses: /usr/lib/libformw.so.5.9 exists in filesystem
ncurses: /usr/lib/libmenu.a exists in filesystem
ncurses: /usr/lib/libmenu.so exists in filesystem
ncurses: /usr/lib/libmenuw.a exists in filesystem
ncurses: /usr/lib/libmenuw.so exists in filesystem
ncurses: /usr/lib/libmenuw.so.5 exists in filesystem
ncurses: /usr/lib/libmenuw.so.5.9 exists in filesystem
ncurses: /usr/lib/libncurses++.a exists in filesystem
ncurses: /usr/lib/libncurses++w.a exists in filesystem
ncurses: /usr/lib/libncurses.a exists in filesystem
ncurses: /usr/lib/libncurses.so exists in filesystem
ncurses: /usr/lib/libncurses.so.5 exists in filesystem
ncurses: /usr/lib/libncurses.so.5.9 exists in filesystem
ncurses: /usr/lib/libncursesw.a exists in filesystem
ncurses: /usr/lib/libncursesw.so exists in filesystem
ncurses: /usr/lib/libncursesw.so.5 exists in filesystem
ncurses: /usr/lib/libncursesw.so.5.9 exists in filesystem
ncurses: /usr/lib/libpanel.a exists in filesystem
ncurses: /usr/lib/libpanel.so exists in filesystem
ncurses: /usr/lib/libpanelw.a exists in filesystem
ncurses: /usr/lib/libpanelw.so exists in filesystem
ncurses: /usr/lib/libpanelw.so.5 exists in filesystem
ncurses: /usr/lib/libpanelw.so.5.9 exists in filesystem
ncurses: /usr/lib/pkgconfig/form.pc exists in filesystem
ncurses: /usr/lib/pkgconfig/formw.pc exists in filesystem
ncurses: /usr/lib/pkgconfig/menu.pc exists in filesystem
ncurses: /usr/lib/pkgconfig/menuw.pc exists in filesystem
ncurses: /usr/lib/pkgconfig/ncurses++.pc exists in filesystem
ncurses: /usr/lib/pkgconfig/ncurses++w.pc exists in filesystem
ncurses: /usr/lib/pkgconfig/ncurses.pc exists in filesystem
ncurses: /usr/lib/pkgconfig/ncursesw.pc exists in filesystem
ncurses: /usr/lib/pkgconfig/panel.pc exists in filesystem
ncurses: /usr/lib/pkgconfig/panelw.pc exists in filesystem
ncurses: /usr/lib/terminfo exists in filesystem
ncurses: /usr/share/licenses/ncurses/license.txt exists in filesystem
ncurses: /usr/share/man/man1/captoinfo.1m.gz exists in filesystem
ncurses: /usr/share/man/man1/clear.1.gz exists in filesystem
ncurses: /usr/share/man/man1/infocmp.1m.gz exists in filesystem
ncurses: /usr/share/man/man1/infotocap.1m.gz exists in filesystem
ncurses: /usr/share/man/man1/ncursesw5-config.1.gz exists in filesystem
ncurses: /usr/share/man/man1/reset.1.gz exists in filesystem
ncurses: /usr/share/man/man1/tabs.1.gz exists in filesystem
ncurses: /usr/share/man/man1/tic.1m.gz exists in filesystem
ncurses: /usr/share/man/man1/toe.1m.gz exists in filesystem
ncurses: /usr/share/man/man1/tput.1.gz exists in filesystem
ncurses: /usr/share/man/man1/tset.1.gz exists in filesystem
ncurses: /usr/share/man/man3/BC.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/COLORS.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/COLOR_PAIR.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/COLOR_PAIRS.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/COLS.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/ESCDELAY.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/LINES.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/PAIR_NUMBER.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/PC.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/SP.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/TABSIZE.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/TYPE_ALNUM.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/TYPE_ALPHA.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/TYPE_ENUM.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/TYPE_INTEGER.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/TYPE_IPV4.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/TYPE_NUMERIC.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/TYPE_REGEXP.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/UP.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/_nc_free_and_exit.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/_nc_freeall.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/_nc_tracebits.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/_traceattr.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/_traceattr2.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/_tracecchar_t.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/_tracecchar_t2.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/_tracechar.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/_tracechtype.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/_tracechtype2.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/_tracedump.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/_tracef.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/_tracemouse.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/acs_map.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/add_wch.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/add_wchnstr.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/add_wchstr.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/addch.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/addchnstr.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/addchstr.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/addnstr.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/addnwstr.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/addstr.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/addwstr.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/assume_default_colors.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/assume_default_colors_sp.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/attr_get.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/attr_off.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/attr_on.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/attr_set.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/attroff.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/attron.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/attrset.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/baudrate.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/baudrate_sp.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/beep.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/beep_sp.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/bkgd.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/bkgdset.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/bkgrnd.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/bkgrndset.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/boolcodes.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/boolfnames.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/boolnames.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/border.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/border_set.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/bottom_panel.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/box.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/box_set.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/can_change_color.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/can_change_color_sp.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/cbreak.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/cbreak_sp.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/ceiling_panel.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/chgat.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/clear.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/clearok.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/clrtobot.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/clrtoeol.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/color_content.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/color_content_sp.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/color_set.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/copywin.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/cur_term.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/current_field.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/current_item.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_add_wch.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_add_wchstr.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_addch.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_addchstr.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_addstr.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_addwstr.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_attr.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_beep.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_bkgd.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_bkgrnd.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_border.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_border_set.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_clear.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_color.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_delch.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_deleteln.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_extend.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_get_wch.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_get_wstr.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_getcchar.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_getch.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_getstr.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_getyx.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_in_wch.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_in_wchstr.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_inch.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_inchstr.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_initscr.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_inopts.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_ins_wch.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_ins_wstr.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_insch.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_insstr.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_instr.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_inwstr.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_kernel.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_legacy.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_memleaks.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_mouse.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_move.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_opaque.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_outopts.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_overlay.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_pad.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_print.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_printw.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_refresh.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_scanw.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_scr_dump.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_scroll.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_set.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_set_sp.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_slk.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_sp_funcs.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_termattrs.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_termcap.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_terminfo.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_threads.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_touch.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_trace.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_util.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_variables.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curs_window.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curscr.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/curses_version.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/data_ahead.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/data_behind.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/def_prog_mode.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/def_prog_mode_sp.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/def_shell_mode.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/def_shell_mode_sp.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/default_colors.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/define_key.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/define_key_sp.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/del_curterm.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/del_curterm_sp.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/del_panel.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/delay_output.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/delay_output_sp.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/delch.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/deleteln.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/delscreen.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/delwin.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/derwin.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/doupdate.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/doupdate_sp.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/dup_field.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/dupwin.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/dynamic_field_info.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/echo.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/echo_sp.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/echo_wchar.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/echochar.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/endwin.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/endwin_sp.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/erase.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/erasechar.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/erasechar_sp.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/erasewchar.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/field_arg.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/field_back.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/field_buffer.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/field_count.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/field_fore.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/field_index.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/field_info.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/field_init.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/field_just.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/field_opts.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/field_opts_off.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/field_opts_on.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/field_pad.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/field_status.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/field_term.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/field_type.3x.gz exists in filesystem
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ncurses: /usr/share/man/man3/wattron.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wattrset.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wbkgd.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wbkgdset.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wbkgrnd.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wbkgrndset.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wborder.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wborder_set.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wchgat.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wclear.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wclrtobot.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wclrtoeol.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wcolor_set.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wcursyncup.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wdelch.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wdeleteln.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wecho_wchar.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wechochar.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wenclose.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/werase.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wget_wch.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wget_wstr.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wgetbkgrnd.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wgetch.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wgetn_wstr.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wgetnstr.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wgetparent.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wgetscrreg.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wgetstr.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/whline.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/whline_set.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/win_wch.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/win_wchnstr.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/win_wchstr.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/winch.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/winchnstr.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/winchstr.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/winnstr.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/winnwstr.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wins_nwstr.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wins_wch.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wins_wstr.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/winsch.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/winsdelln.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/winsertln.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/winsnstr.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/winsstr.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/winstr.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/winwstr.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wmouse_trafo.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wmove.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wnoutrefresh.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wprintw.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wredrawln.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wrefresh.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wresize.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wscanw.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wscrl.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wsetscrreg.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wstandend.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wstandout.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wsyncdown.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wsyncup.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wtimeout.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wtouchln.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wunctrl.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wunctrl_sp.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wvline.3x.gz exists in filesystem
ncurses: /usr/share/man/man3/wvline_set.3x.gz exists in filesystem
ncurses: /usr/share/man/man5/term.5.gz exists in filesystem
ncurses: /usr/share/man/man5/terminfo.5.gz exists in filesystem
ncurses: /usr/share/man/man7/term.7.gz exists in filesystem
ncurses: /usr/share/tabset/std exists in filesystem
ncurses: /usr/share/tabset/stdcrt exists in filesystem
ncurses: /usr/share/tabset/vt100 exists in filesystem
ncurses: /usr/share/tabset/vt300 exists in filesystem
ncurses: /usr/share/terminfo/1/1178 exists in filesystem
ncurses: /usr/share/terminfo/1/1730-lm exists in filesystem
ncurses: /usr/share/terminfo/2/2621 exists in filesystem
ncurses: /usr/share/terminfo/2/2621-wl exists in filesystem
ncurses: /usr/share/terminfo/2/2621A exists in filesystem
ncurses: /usr/share/terminfo/2/2621a exists in filesystem
ncurses: /usr/share/terminfo/3/386at exists in filesystem
ncurses: /usr/share/terminfo/3/3b1 exists in filesystem
ncurses: /usr/share/terminfo/4/4025ex exists in filesystem
ncurses: /usr/share/terminfo/4/4027ex exists in filesystem
ncurses: /usr/share/terminfo/4/4410-w exists in filesystem
ncurses: /usr/share/terminfo/5/5051 exists in filesystem
ncurses: /usr/share/terminfo/5/5410-w exists in filesystem
ncurses: /usr/share/terminfo/5/5620 exists in filesystem
ncurses: /usr/share/terminfo/5/5630-24 exists in filesystem
ncurses: /usr/share/terminfo/5/5630DMD-24 exists in filesystem
ncurses: /usr/share/terminfo/6/6053 exists in filesystem
ncurses: /usr/share/terminfo/6/6053-dg exists in filesystem
ncurses: /usr/share/terminfo/6/605x exists in filesystem
ncurses: /usr/share/terminfo/6/605x-dg exists in filesystem
ncurses: /usr/share/terminfo/6/630-lm exists in filesystem
ncurses: /usr/share/terminfo/6/630MTG-24 exists in filesystem
ncurses: /usr/share/terminfo/7/730MTG-24 exists in filesystem
ncurses: /usr/share/terminfo/7/730MTG-41 exists in filesystem
ncurses: /usr/share/terminfo/7/730MTG-41r exists in filesystem
ncurses: /usr/share/terminfo/7/730MTGr exists in filesystem
ncurses: /usr/share/terminfo/7/730MTGr-24 exists in filesystem
ncurses: /usr/share/terminfo/8/8510 exis

Please edit your post and use code tags when posting logs and error messages to the boards:
https://wiki.archlinux.org/index.php/Fo … s_and_Code
As to your errors, this is documented in the wiki:
https://wiki.archlinux.org/index.php/Pa … stem.22.21

Can't Update Because file "exists in filesystem" [SOLVED]

I am having the below problem:
$ sudo pacman -Suyy
:: Synchronizing package databases...
core 112.9 KiB 2.83M/s 00:00 [###############################################] 100%
extra 1763.2 KiB 845K/s 00:02 [###############################################] 100%
community 2.3 MiB 2.65M/s 00:01 [###############################################] 100%
archlinuxfr 19.7 KiB 160K/s 00:00 [###############################################] 100%
:: Starting full system upgrade...
error: could not open file /var/lib/pacman/local/ldb-1.1.16-1/desc: No such file or directory
:: Replace lzo2 with core/lzo? [Y/n]
resolving dependencies...
error: could not open file /var/lib/pacman/local/libgxps-0.2.2-3/desc: No such file or directory
looking for inter-conflicts...
Packages (43): cairo-1.12.16-3 cups-1.7.5-1 device-mapper-2.02.108-1 dhcpcd-6.4.3-1 e2fsprogs-1.42.11-1 epiphany-3.12.1-2
ffmpeg-1:2.3.1-1 gettext-0.19.2-1 git-2.0.4-1 kdelibs-4.13.3-2 ldb-1.1.17-1 libarchive-3.1.2-8 libcups-1.7.5-1
libkolab-0.5.2-1 libpeas-1.10.1-1 libutil-linux-2.25-3 libwbclient-4.1.11-1 linux-3.15.8-1 linux-headers-3.15.8-1
lvm2-2.02.108-1 lzo-2.08-3 lzo2-2.08-1 [removal] meld-3.11.2-3 mesa-10.2.5-1 mkinitcpio-18-1 parted-3.2-1
phpmyadmin-4.2.7-1 python-setuptools-1:5.4.2-1 python2-boto-2.32.1-1 s-nail-14.7.5-1 samba-4.1.11-1
smartmontools-6.3-1 smbclient-4.1.11-1 syslinux-6.03pre19-1 tar-1.28-1 tdb-1.3.0-2 traceroute-2.0.20-1
util-linux-2.25-3 virtualbox-4.3.14-3 xorg-server-1.16.0-6 xorg-server-common-1.16.0-6 xorg-xrandr-1.4.3-1
zenity-3.12.1-2
Total Installed Size: 450.30 MiB
Net Upgrade Size: 1.10 MiB
:: Proceed with installation? [Y/n]
(42/42) checking keys in keyring [###############################################] 100%
(42/42) checking package integrity [###############################################] 100%
(42/42) loading package files [###############################################] 100%
(42/42) checking for file conflicts [###############################################] 100%
error: failed to commit transaction (conflicting files)
ldb: /usr/bin/ldbadd exists in filesystem
ldb: /usr/bin/ldbdel exists in filesystem
ldb: /usr/bin/ldbedit exists in filesystem
ldb: /usr/bin/ldbmodify exists in filesystem
ldb: /usr/bin/ldbrename exists in filesystem
ldb: /usr/bin/ldbsearch exists in filesystem
ldb: /usr/include/ldb.h exists in filesystem
ldb: /usr/include/ldb_errors.h exists in filesystem
ldb: /usr/include/ldb_handlers.h exists in filesystem
ldb: /usr/include/ldb_module.h exists in filesystem
ldb: /usr/include/ldb_version.h exists in filesystem
ldb: /usr/include/pyldb.h exists in filesystem
ldb: /usr/lib/ldb/libldb-cmdline.so exists in filesystem
ldb: /usr/lib/ldb/modules/ldb/asq.so exists in filesystem
ldb: /usr/lib/ldb/modules/ldb/ldap.so exists in filesystem
ldb: /usr/lib/ldb/modules/ldb/paged_results.so exists in filesystem
ldb: /usr/lib/ldb/modules/ldb/paged_searches.so exists in filesystem
ldb: /usr/lib/ldb/modules/ldb/rdn_name.so exists in filesystem
ldb: /usr/lib/ldb/modules/ldb/sample.so exists in filesystem
ldb: /usr/lib/ldb/modules/ldb/server_sort.so exists in filesystem
ldb: /usr/lib/ldb/modules/ldb/skel.so exists in filesystem
ldb: /usr/lib/libldb.so exists in filesystem
ldb: /usr/lib/libldb.so.1 exists in filesystem
ldb: /usr/lib/libpyldb-util.so exists in filesystem
ldb: /usr/lib/libpyldb-util.so.1 exists in filesystem
ldb: /usr/lib/pkgconfig/ldb.pc exists in filesystem
ldb: /usr/lib/pkgconfig/pyldb-util.pc exists in filesystem
ldb: /usr/lib/python2.7/site-packages/ldb.so exists in filesystem
Errors occurred, no packages were upgraded.
Recently I did have a problem with my pacman DB files over here but I fixed that. I also tried now making a new empty /var/lib/pacman/sync directory but the output is the same as above.
I tried Googling for this issue but I am not succeededing.
Can anyone advise what I can do to troubleshoot this?
Last edited by CaptainKirk (2014-08-07 11:28:01)

Thank you for that link.
I checked the first two /usr/bin/ldbadd and /usr/bin/ldbdel and no package owns them. So I ran:
sudo pacman -S --force lib32-libdbus
because now I got:
:: Replace lib32-dbus-core with multilib/lib32-libdbus? [Y/n]
because I just enabled multilib in order to upgrade skype (which worked). Anyhow, the install of lib32-libdbus worked fine, but
pacman -Syu
still gives all the errors above. Should I try to rename all those files?
Your title however is misleading - nothing says files are missing, the problem is those files are already there but pacman doesn't know why.
Well, I also see this:
error: could not open file /var/lib/pacman/local/ldb-1.1.16-1/desc: No such file or directory
as well as another. So something does appear to be missing to me.

[SOLVED] cannot install perf due to python2 ... exists in filesystem e

sudo pacman -S perf
resolving dependencies...
looking for inter-conflicts...
Packages (2): python2-2.7.5-2 perf-3.11-2
Total Installed Size: 68.71 MiB
:: Proceed with installation? [Y/n]
1 resolving dependencies...
2 looking for inter-conflicts...
3
4 Packages (2): python2-2.7.5-2 perf-3.11-2
5
6 Total Installed Size: 68.71 MiB
7
8 checking keyring...
9 checking package integrity...
10 loading package files...
11 checking for file conflicts...
12 python2: /usr/bin/2to3-2.7 exists in filesystem
13 python2: /usr/bin/idle2 exists in filesystem
14 python2: /usr/bin/pydoc2 exists in filesystem
15 python2: /usr/bin/python2 exists in filesystem
16 python2: /usr/bin/python2-config exists in filesystem
17 python2: /usr/bin/python2.7 exists in filesystem
18 python2: /usr/bin/python2.7-config exists in filesystem
19 python2: /usr/include/python2.7/Python-ast.h exists in filesystem
20 python2: /usr/include/python2.7/Python.h exists in filesystem
21 python2: /usr/include/python2.7/abstract.h exists in filesystem
22 python2: /usr/include/python2.7/asdl.h exists in filesystem
23 python2: /usr/include/python2.7/ast.h exists in filesystem
24 python2: /usr/include/python2.7/bitset.h exists in filesystem
25 python2: /usr/include/python2.7/boolobject.h exists in filesystem
26 python2: /usr/include/python2.7/bufferobject.h exists in filesystem
27 python2: /usr/include/python2.7/bytearrayobject.h exists in filesystem
28 python2: /usr/include/python2.7/bytes_methods.h exists in filesystem
29 python2: /usr/include/python2.7/bytesobject.h exists in filesystem
30 python2: /usr/include/python2.7/cStringIO.h exists in filesystem
31 python2: /usr/include/python2.7/cellobject.h exists in filesystem
32 python2: /usr/include/python2.7/ceval.h exists in filesystem
33 python2: /usr/include/python2.7/classobject.h exists in filesystem
34 python2: /usr/include/python2.7/cobject.h exists in filesystem
35 python2: /usr/include/python2.7/code.h exists in filesystem
36 python2: /usr/include/python2.7/codecs.h exists in filesystem
37 python2: /usr/include/python2.7/compile.h exists in filesystem
38 python2: /usr/include/python2.7/complexobject.h exists in filesystem
39 python2: /usr/include/python2.7/datetime.h exists in filesystem
40 python2: /usr/include/python2.7/descrobject.h exists in filesystem
41 python2: /usr/include/python2.7/dictobject.h exists in filesystem
42 python2: /usr/include/python2.7/dtoa.h exists in filesystem
43 python2: /usr/include/python2.7/enumobject.h exists in filesystem
44 python2: /usr/include/python2.7/errcode.h exists in filesystem
45 python2: /usr/include/python2.7/eval.h exists in filesystem
Errors occurred, no packages were upgraded.
(yes those are line numbers, sorry)
Any ideas?
Last edited by busey (2013-11-11 21:58:55)

There are a number of files on your system that a package wants to provide thus causing a conflict. Aborting with warnings is the expected behavior. Now the question is: what placed the files on your system? Did you manually compile and install python2 or other packages by chance?
Let's see if any package that pacman installed owns one of those files (I'm guessing now); post the output of:
pacman -Qo /usr/include/python2.7/abstract.h
As that was your 1st post, welcome to Arch. Plz use code tags in your posts --> https://bbs.archlinux.org/help.php#bbcode
Last edited by graysky (2013-11-11 20:50:01)

[Solved] KDEMod Install Errors -- "Exists in Filesystem"

I just put a fresh Arch install on my box. I've been using VectorLinux 5.x SOHO since, well, for years, and have been meaning to try Arch beyond just exploratory use. My Vector 5.1.1 SOHO install is just simply showing it's age now and after 5.9 SOHO was released as a pay-for-only release, I'm finally getting around to give Arch a serious go.
Current Setup:
- Fresh Arch Install via latest iso release, bare-bones install, only base [forced] selected.
- Nvidia 173.14.09 installed via official Nvidia installer aka "sh NVIDIA-Linux-x86-71.86.06-pkg1.run". Required an install of gcc and make to work.
I attempted to install KDEMod via the directions on their site, but I got the follow errors:
checking package integrity...
checking for file conflicts...
error: could not prepare transaction
libgl: /usr/lib/libGL.so exists in filesystem
libgl: /usr/lib/libGL.so.1 exists in filesystem
libgl: /usr/lib/xorg/modules/extensions/libglx.so exists in filesystem
mesa: /usr/include/GL/gl.h exists in filesystem
mesa: /usr/include/GL/glext.h exists in filesystem
mesa: /usr/include/GL/glx.h exists in filesystem
mesa: /usr/include/GL/glxext.h exists in filesystem
Errors occurred, no packages were upgraded.
Full output via "pacman -S kdemod > ouput.txt"
Did that official Nvidia install process mess things up? Not sure how to remove it if so. I guess I could just --force all the "exists in filesystem" errors, right? I guess I'm just posting in case there's something more going on here.
I did do a "pacman -Syu" before install KDEMod, as recommended. Not too many updates, but one was a kernel upgrade from 2.6.25-ARCH to 2.6.25.11-1, or something like that. Perhaps this messed things up?
Thanks for helping out a newb Archer.
DrCR
Last edited by DrCR (2008-07-29 22:17:05)

Solution:
I was able to uninstall the Official, Nvidia binary via:
nvidia-installer --uninstall
Not sure how clean/thorough the uninstall is, but the fact that nvidia-installer is itself absent from /usr/bin after the uninstall may be a good sign. At any rate, pacman -S kdemod worked after the uninstall.
I've learned my lesson -- I need to pay more attention to the wikis before doing what I'm used to.
Thanks for all the help guys!
DrCR

Conflicting Files Error /foo/bar exists in filesystem

I tried to do a full update last night and once pacman had acquired all of the files it produced some errors which can be seen below (all of the packages I Targets (353): libx11-1.1.5-2 expat-2.0.1-2 dbus-core-1.2.3-1 dbus-1.2.3-3 bluez-4.1-1 a52dec-0.7.4-4 gpm-1.20.5-2 aalib-1.4rc5-6 libpng-1.2.33-1 libjpeg-6b-5 libtiff-3.8.2-4 hal-info-0.20081022-1 pciutils-3.0.2-1 procps-3.2.7-5 pm-utils-1.2.2.1-1 bash-3.2.039-3 e2fsprogs-1.41.3-2 util-linux-ng-2.14-1 udev-130-1 hal-0.5.11-4 libdrm-2.4.1-1 openssl-0.9.8i-2 xkeyboard-config-1.3-1 libpciaccess-0.10.4-1 xorg-server-1.5.2-3 nvidia-utils-177.80-1 mesa-7.2-1 sqlite3-3.6.4-1 qt-4.4.3-1 shared-mime-info-0.51-1 akonadi-1.0.0-2 gettext-0.17-2 heimdal-1.2-2 alpine-2.00-1 alsa-lib-1.0.17a-2 dialog-1.1_20080819-1 alsa-utils-1.0.17-1 amarok-engine-xine-1.4.10-1 postgresql-libs-8.3.5-1 qt3-3.3.8-9 ruby-1.8.7_p72-2 amarok-base-1.4.10-1 apr-1.3.3-1 unixodbc-2.2.12-2 apr-util-1.3.4-1 apache-2.2.10-1 archlinux-menus-2.1-2 aspell-0.60.6-2 libbonobo-2.24.0-1 at-spi-1.24.0-2 texinfo-4.13a-1 m4-1.4.12-1 autoconf-2.63-1 avahi-0.6.23-1 binutils-2.18-9 bzip2-1.0.5-3 python-2.6-2 boost-1.36.0-2 gnome-keyring-2.24.1-1 fam-2.7.0-11 popt-1.14-1 tdb-3.2.4-1 smbclient-3.2.4-3 gnome-vfs-2.24.0-1 libgnome-2.24.1-1 libbonoboui-2.24.0-1 libgnomeui-2.24.0-1 libglade-2.6.3-1 evolution-data-server-2.24.1-1 totem-plparser-2.24.2-1 brasero-0.8.2-2 pycairo-1.6.4-2 pygobject-2.15.4-2 python-numeric-24.2-3 pygtk-2.13.0-2 gnome-menus-2.24.1-3 libxau-1.0.4-1 libgtop-2.24.0-1 bug-buddy-2.24.1-1 run-parts-2.30-1 ca-certificates-20080809-5 cairomm-1.6.4-1 cdparanoia-10.2-2 gstreamer0.10-base-plugins-0.10.21-1 librsvg-2.22.3-1 cheese-2.24.1-1 curl-7.19.0-1 conky-1.6.1-2 cpufrequtils-005-2 cracklib-2.8.13-1 libgcrypt-1.4.3-2 cryptsetup-1.0.6-2 gnome-speech-0.4.21-1 dasher-4.9.0-1 dbus-python-0.83.0-2 desktop-file-utils-0.15-1 dhcpcd-4.0.3-1 libassuan-1.0.5-1 libksba-1.0.3-1 dirmngr-1.0.2-1 jre-6u10-1 jdk-6u10-1 hunspell-1.2.6-1 xulrunner-1.9.0.3-1 eclipse-3.4.1-1 eclipse-cdt-5.0.1-1 ed-1.1-2 gnome-desktop-2.24.1-1 eel-2.24.1-1 emacs-nox-22.3-2 gnome-icon-theme-2.24.0-1 eog-2.24.1-1 libtool-2.2.6a-1 libcanberra-0.10-1 epiphany-2.24.1-2 poppler-glib-0.8.6-1 evince-2.24.1-1 evolution-webcal-2.24.0-1 libxfce4util-4.4.3-1 exo-0.3.4-3 fakeroot-1.10.1-1 file-4.26-1 file-roller-2.24.1-1 wxgtk-2.8.9-1 filezilla-3.1.2-1 firefox-3.0.3-1 flashplugin-10.0.12.36-2 fluxbox-1.1.1-1 frostwire-4.17.0-1 fuse-2.7.4-1 gcalctool-5.24.1-1 gmp-4.2.4-1.1 gcc-4.3.2-1 gconf-editor-2.24.1-1 gksu-2.0.0-4 pam-1.0.2-2 zenity-2.24.0-1 consolekit-0.3.0-2 gdm-2.20.8-1 gtksourceview2-2.4.0-1 pygtksourceview2-2.4.0-1 gedit-2.24.0-2 ghostscript-8.63-3 babl-0.0.22-1 gegl-0.0.20-1 gimp-2.6.2-1 libsigc++2.0-2.2.3-1 glibmm-2.18.1-1 libical-0.41-1 gnokii-0.6.26-2 libgweather-2.24.1-1 libwnck-2.24.1-1 policykit-gnome-0.9.2-2 gnome-panel-2.24.1-1 gucharmap-2.24.1.1-1 libxklavier-3.7-1 libgnomekbd-2.24.0-1 gnome-applets-2.24.1-2 gnome-backgrounds-2.24.0-1 gnome-settings-daemon-2.24.0-1 metacity-2.24.0-1 sound-theme-freedesktop-0.1-1 gnome-control-center-2.24.0.1-3 rarian-0.8.1-1 gnome-doc-utils-0.14.0-1 pyorbit-2.24.0-2 gnome-python-2.22.3-3 gnome-python-desktop-2.24.0-2 gnome-games-2.24.1-1 gnome-games-extra-data-2.24.0-1 gnome-mag-0.15.4-1 gnome-media-2.24.0.1-1 gnome-netstatus-2.12.2-1 dnsutils-9.5.0.P2-1 xinetd-2.3.14-3 netkit-bsd-finger-0.17-3 whois-4.7.28-2 gnome-nettool-2.22.1-1 gnome-power-manager-2.24.1-1 gnome-screensaver-2.24.0-1 gnome-session-2.24.1-1 libgdiplus-2.0-1 mono-2.0-1 gtk-sharp-2-2.12.5-1 gnome-sharp-2.24.0-1 pango-1.22.2-1 pangomm-2.14.0-1 gtkmm-2.14.1-1 gnome-system-monitor-2.24.1-1 vte-0.17.4-2 gnome-terminal-2.24.1.1-1 gtk-engines-2.16.0-1 gnome-themes-2.24.1-1 gnome-utils-2.24.1-1 gnome-volume-manager-2.24.0-1 lzma-utils-4.32.7-1 yelp-2.24.0-2 gnome2-user-docs-2.24.0-1 pinentry-0.7.5-3 gnupg2-2.0.9-1 gok-2.24.0-1 grub-0.97-13 gstreamer0.10-python-0.10.13-2 gtk-xfce-engine-2.4.3-1 libcdio-0.80-3 libgphoto2-2.4.3-1 gvfs-1.0.2-1 hdparm-8.9-1 hwdetect-0.9.1-2 ilmbase-1.0.1-1 openexr-1.6.1-1 imagemagick-6.4.5.1-1 initscripts-2008.09-2 inputproto-1.4.4-1 linux-atm-2.5.0-1 iproute-2.6.26-1 iputils-20071127-2 irssi-0.8.12-4 jack-audio-connection-kit-0.109.2-2 jfsutils-1.1.13-1 k3b-1.0.5-2 module-init-tools-3.4-1 kernel26-2.6.27.4-1 klibc-1.5.14-1 klibc-extras-2.5-1 klibc-kbd-1.15.20080312-7 klibc-module-init-tools-3.4-2 klibc-udev-130-1 libburn-0.5.2-1 libdvdcss-1.2.10-1 libepc-0.3.8-1 libgnomecups-0.2.3-3 libgnomeprint-2.18.3-3 mutagen-1.14-2 libgpod-0.6.0-3 libieee1284-0.2.11-2 libisofs-0.6.10-1 libnjb-2.2.5-4 libnova-0.12.2-1 libraw1394-1.3.0-2 libtasn1-1.5-2 libtorrent-0.11.9-2 libxfce4mcs-4.4.3-1 libxfcegui4-4.4.3-1 libzip-0.9-1 physfs-1.1.1-1 sdl-1.2.13-3 sdl_mixer-1.2.8-3 links-2.2-2 lirc-utils-0.8.3-1 logrotate-3.7.7-3 madwifi-utils-0.9.4.3844-1 madwifi-0.9.4.3844-2 man-pages-3.11-1 mdadm-2.6.7-1 mlocate-0.21-1 moc-2.4.3-4 mono-addins-0.3.1-4 mousepad-0.2.14-1 mpg123-1.6.0-1 nano-2.0.9-1 nautilus-2.24.1-1 nautilus-cd-burner-2.24.0-1 neon-0.28.3-1 netkit-ftp-0.17-6 nitrogen-1.4-1 ntfs-3g-1.5012-1 rrdtool-1.2.27-2 ntop-3.3.8-1 nvidia-177.80-2 icu-4.0-2 hsqldb-java-1.8.0.10-1 openoffice-base-3.0.0-3 openssh-5.1p1-1 opera-9.62-1 orca-2.24.1-2 pacman-3.2.1-1 pcmciautils-015-2 postgresql-8.3.5-1 procinfo-19-3 psmisc-22.6-2 python-gdata-1.2.2-2 pyxml-0.8.4-5 qimageblitz-0.0.5-1 quodlibet-2.0-3 rhythmbox-0.11.6-3 rp-pppoe-3.10-1 rtorrent-0.7.9-3 shadow-4.1.2.1-2 screen-4.0.3-6 scrnsaverproto-1.1.0-2 sdparm-1.03-1 zip-3.0-1 seahorse-2.24.1-1 sound-juicer-2.24.0-1 speex-1.2rc1-1 thunar-0.9.3-1 squeeze-0.2.3-2 strace-4.5.18-1 strigi-0.5.11.1-1 subversion-1.5.4-1 synergy-1.3.1-2 tcl-8.5.5-1 terminal-0.2.8.3-1 terminus-font-4.28-1 texlive-core-2008.11171-1 texlive-latexextra-2008.11143-1 tk-8.5.5-1 gtkhtml-3.24.1-1 gnome-desktop-sharp-2.24.0-1 tomboy-0.12.1-2 totem-2.24.3-1 tree-1.5.2.1-2 ttf-dejavu-2.26-1 tzdata-2008h-1 v86d-0.1.9-1 vi-7.2.25-1 vino-2.24.1-1 libv4l-0.5.3-1 vlc-0.9.5-3 which-2.20-1 wine-1.1.7-1 wireshark-1.0.4-1 xcb-proto-1.2-2 xdm-archlinux-0.3-2 xextproto-7.0.3-2 xf86-video-nv-2.1.12-1 xf86-video-vesa-2.0.0-2 xfce-mcs-manager-4.4.3-1 xfce-mcs-plugins-4.4.3-1 xfce-utils-4.4.3-1 xfce4-appfinder-4.4.3-1 xfce4-icon-theme-4.4.3-1 xfce4-panel-4.4.3-1 xfce4-mixer-4.4.3-2 xfce4-session-4.4.3-1 xfdesktop-4.4.3-1 xfprint-4.4.3-1 xfsprogs-2.10.1-1 xfwm4-4.4.3-1 xfwm4-themes-4.4.3-1 xine-ui-0.99.5-4 xorg-twm-1.0.4-2 xpdf-3.02_pl2-2 xscreensaver-5.07-1 xterm-235-2 xtrans-1.2.2-1 xvidcore-1.1.3-2 yakuake-2.9.4-1
An example of the messages I get is below, they are all the same and just for klibc and xulrunner. What do you recommend?
checking package integrity... (353/353) checking for file conflicts [############################################################################################################### error: could not prepare transaction error: failed to commit transaction (conflicting files) xulrunner: /usr/include/xulrunner-1.9 exists in filesystem klibc: /usr/lib/klibc/include/asm/xor_64.h exists in filesystem
Errors occurred, no packages were upgraded.
Thanks in advance,
Tom upgraded can also be seen below):

mpfr-2.3.2-2

guile-1.8.4-3

lincity-ng-1.1.2-3

netcfg-2.1.2-1

###########################] 100%

The fix for klibc is to run
rm /usr/lib/klibc/include/asm
then upgrade.
I uninstalled xulrunner with
pacman -Rc xulrunner
and reinstalled firefox. It worked but I don't know if that's the best way.

[SOLVED] /usr/share/aclocal/nspr.m4 exists in filesystem

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