SSDT Schema Compare puts objects in the root of project instead of the correct schema

Hello,
Since last week I encountered a problem when synchronizing my database project with a database.
When I try to sync new objects (tables / sp's / views) the *.sql scripts are put in the root of my project directory instead of the directory with corresponding schema (schema folder already exists!). Every time after I do a sync I have to manually put all
the scripts in the right folders. 
I have a SQL Server 2014 Project in VS 2013 (update 4).
Version 12.0.31101.00
SSDT 12.0.41025.0
.NET Framework 4.5.50938
I haven't had a VS update since the last release in November. Can this be caused by Windows Updates? 
Anyone else with this problem?
Mohsine

I think this is "one of those things".
When you initially create a project by importing objects from an existing database you have a couple of options for project layout; schema/object type or object type only.
When adding new objects, I don't think there's any way to tell SSDT where in the project you want these located.
However, it is possible to drag and drop objects from the SQL Server Object Explorer into folders in solution explorer - with no guarantees that this won't break your build in the event that the "dragged in" object references other objects not
present in the project. As far as I'm aware, this capability is not documented anywhere!
You might want to think about your wider workflow; would it not be easier to create objects directly in the project rather than creating in SSMS (for example) and subsequently importing?
http://xkcd.com/979/

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