Transformation issue with EDI 841 xsd generated by document editor

Hi,
I was trying to create a B2B Outbound interface with Doc Standard as EDI X12. When our custom payload for item is being mapped to the xsd of doc type 841 (generated using standard ecs with Oracle Doc Editor), the xengine is behaving a little weird. It's generating a file in the output directory for sure, but it's not having all the data I mapped. For Example, I wanted to have a datafile as below:
ST~841~000000001
SPI~00~~~~~~04~MF
AMT~LI~0
HL~1~~I~0
SPI~ZZ
LIN~~PN~ABC
MSG~ABC
PID~F~~~~ABC
REF~ZZ~BaseUOMCode~EA~ZZ>EACH
SE~38~000000001
For which I mapped in xslt quite a few elements and corresponding payload that is coming in the console application message is as below:
<?xml version = '1.0' encoding = 'UTF-8'?>
<Transaction-841 xmlns:ns10="urn:oracle:b2b:X12/V4010/841" Standard="X12"
                 xmlns="urn:oracle:b2b:X12/V4010/841">
  <ns10:Segment-ISA>
    <ns10:Element-I12/>
  </ns10:Segment-ISA>
  <ns10:Segment-GS>
    <ns10:Element-28/>
  </ns10:Segment-GS>
  <ns10:Segment-ST>
    <ns10:Element-143>841</ns10:Element-143>
    <ns10:Element-329>1</ns10:Element-329>
  </ns10:Segment-ST>
  <ns10:Loop-HL>
    <ns10:Segment-HL>
      <ns10:Element-628>1</ns10:Element-628>
      <ns10:Element-735>I</ns10:Element-735>
      <ns10:Element-736>0</ns10:Element-736>
    </ns10:Segment-HL>
    <ns10:Loop-SPI>
      <ns10:Segment-SPI>
        <ns10:Element-786>ZZ</ns10:Element-786>
      </ns10:Segment-SPI>
      <ns10:Segment-LIN>
        <ns10:Element-235>PN</ns10:Element-235>
        <ns10:Element-234>ABC</ns10:Element-234>
      </ns10:Segment-LIN>
      <ns10:Segment-MSG>
        <ns10:Element-933>ABC</ns10:Element-933>
      </ns10:Segment-MSG>
    </ns10:Loop-SPI>
    <ns10:Loop-PID>
      <ns10:Segment-PID>
        <ns10:Element-349>F</ns10:Element-349>
        <ns10:Element-352>ABC</ns10:Element-352>
      </ns10:Segment-PID>
    </ns10:Loop-PID>
    <ns10:Loop-REF>
      <ns10:Segment-REF>
        <ns10:Element-128>ZZ</ns10:Element-128>
        <ns10:Element-127>BaseUOMCode</ns10:Element-127>
        <ns10:Element-352>Ea</ns10:Element-352>
        <ns10:Composite-C040>
          <ns10:Element-128>ZZ</ns10:Element-128>
          <ns10:Element-127>Each</ns10:Element-127>
        </ns10:Composite-C040>
      </ns10:Segment-REF>
    </ns10:Loop-REF>
  </ns10:Loop-HL>
  <ns10:Segment-SE>
    <ns10:Element-96>38</ns10:Element-96>
    <ns10:Element-329>1</ns10:Element-329>
  </ns10:Segment-SE>
  <ns10:Segment-GE>
    <ns10:Element-28/>
  </ns10:Segment-GE>
  <ns10:Segment-IEA>
    <ns10:Element-I12/>
  </ns10:Segment-IEA>
</Transaction-841>
However when the file is getting generated, the content misses the LIN Segment and below REF segment. It comes as below:
ISA~00~          ~00~          ~ZZ~079763140      ~ZZ~V1             ~140901~1118~U~00401~100000012~1~T~>
GS~GS~079763140~V1~20140901~1118~1012~X~004010
ST~841~000000001
SPI~00~~~~~~04~MF
AMT~LI~0
HL~1~~I~0
SE~38~000000001
GE~1~1012
IEA~1~100000012
Below are missing:
SPI~ZZ
LIN~~PN~ABC
MSG~ABC
PID~F~~~~ABC
REF~ZZ~BaseUOMCode~EA~ZZ>EACH
We are on 11G. What could go wrong here? Any help is appreciated.
Regards,
Subhadeep

The problem is resolved after re-upload of ecs and xsd. There was a version mismatch and keeping validation off was generating half cooked file. Thanks for reading.
Regards,
Subhadeep

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