Upraded to 10.5.6 and two of my four displays are no longer "detectable"

I was happily running 4 displays from my 2 graphics cards (9600XT and 9200) under 10.3.9. 3 x DVI (one of which is with the ACI adapter) and 1 running via VGA to a plasma TV. The 3 displays running from DVI were all "name" recognized in System Preferences and all resolution options were available under 10.3.9.
I have now upgraded to 10.5.6 (and subsequently 10.5.8 in case that solved the issue) and suddenly two of the displays aren't recognized and I am only given a single, low resolution option, if I press "Detect" is does nothing but if I untick the button to show me all Colour profiles..there are all my original profiles with the names of the displays but you can't select them per se. - also on these two affected displays, display the Leopard background (the Universe pic) is mainly blue - almost like when you have a loose cable (but they are not). It's almost like the black and yellow has been take out. Both screens are "usable" in that you can clearly read them just one is now in 640 x 400 ( I think) and the other in 1024 x 768 (24" Widescreen Dell).
The problem is not card specific i.e. it seem to effect one socket from each card - the VGA on the stock Apple ATI card and one DVI on the ATI 9200
I have tried swapping the displays between the cards and when I do the alternate display is then recognized so it can't be a problem with any of the displays either.
Any ideas? I need all 4 displays running in their respective resolutions (and without a blue screen) for Logic screenshots.
Message was edited by: Pipmeister

Ok.. tried the Sysresex that fixed others HDMI Mac Mini problem - but that didn't work. It can't be a problem with Application Enhancer as I didn't have that installed, although I do now just to see if it made any difference.
I have tried unseating and reseating both video cards and nothing. I know it's not the drivers for the displays as they work when swapped.

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