Why are there iOS Applications AND mobile Applications folders?

I am cleaning up my hard drive for 2013 and have disovered that my iTunes folder is the largest folder. Good for me.
Within my itunes folder are both an iOS Applications folder and a Mobile Applications folder They both have recent Modifed Dates and there is some .ipa overlap in terms of applications and serial numbers, it seems like the older stuff is in the iOS Applications folder. I own both an iPad and iPhone but cannot seem to fathom any consistency as to which apps go where.
Do I need both of these and if not is there an easy way to resolve the "problem"? (Assuming it really is a problem.)

Interesting, I only have the Mobile Applications folder. If there are any applications that appear in the iOS folder but not in the mobile folder, you can move them over to the mobile folder, and then delete the other one.

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