AddressBook corrupt and Internet Passwords wiped

Question

Hello--
SOHO network running from ML 10.8.5/Server 2.2.2.  My primary workstation upgraded to Mavericks.  After spending most of last week rebuilding the server and getting other things fixed, I had hoped to be doing work this week.  Unfortunately, the system, in particular my account on Mavericks, remains unreliable (I never thought I'd say this but good thing I had Windows running in a VM so I got some work done!). 
The particular problem seems to include at least three issues, which may in part be related.
1) Corruption/zero out of local copy of addressbook (AddressBook-v22.abcddb).  My addressbook is served from the ML server which, thus far, has remained intact.  However, I find the locally synced copy on Mavericks gets corrupted and then wiped.  Here are part of the log entries when this seemed to occur last:
12/9/13 10:44:25.934 AM CalendarAgent[201]: Database file is empty: /Network/Servers/<path_to_user_home>/Library/Application Support/AddressBook/Sources/<a long uid>/AddressBook-v22.abcddb
12/9/13 10:44:29.101 AM CalendarAgent[201]: Database file is empty: /Network/Servers/<path_to_user_home>/Library/Application Support/AddressBook/AddressBook-v22.abcddb
12/9/13 10:44:44.923 AM com.apple.quicklook.satellite[249]: Move Address Book store at /Network/Servers/<path_to_user_home>/Library/Application Support/AddressBook/Sources/<a long uid>/AddressBook-v22.abcddb to /Network/Servers/<path_to_user_home>/Library/Application Support/AddressBook/Sources/<a long uid>/AddressBook-v22.abcddb.8CA923C4-4447-46F4-B9F4-CC6C5B36A0E7.unknown
12/9/13 10:44:46.093 AM com.apple.quicklook.satellite[249]: Could not replace store at file:///Network/Servers/<path_to_user_home>/Library/Application%20Support/AddressBook/Sources/<a long uid>/AddressBook-v22.abcddb.8CA923C4-4447-46F4-B9F4-CC6C5B36A0E7.unknown from file:///Network/Servers/<path_to_user_home>/Library/Application%20Support/AddressBook/Sources/<a long uid>/AddressBook-v22.abcddb: Error Domain=NSSQLiteErrorDomain Code=3 "The operation couldn’t be completed. (NSSQLiteErrorDomain error 3.)" UserInfo=0x7fade0c27a20 {NSFilePath=/Network/Servers/<path_to_user_home>/Library/Application Support/AddressBook/Sources/<a long uid>/AddressBook-v22.abcddb.8CA923C4-4447-46F4-B9F4-CC6C5B36A0E7.unknown, reason=Failed to replace destination database} {
    NSFilePath = "/Network/Servers/<path_to_user_home>/Library/Application Support/AddressBook/Sources/<a long uid>/AddressBook-v22.abcddb.8CA923C4-4447-46F4-B9F4-CC6C5B36A0E7.unknown";
    reason = "Failed to replace destination database";
And another entry indicates the Addressbook-v22.abcddb file is corrupted. 
I also can note that I had a profile set up through Profile Manager that aimed to log users off after 30 minutes of activity.  The profile has not executed successfully yet on either Lion or Mavericks clients.  Because it wasn't work, I removed it today. 
My first console entry this morning when I tried to use the computer which was hung on Reminders trying to logout:
12/9/13 5:50:23.147 AM AddressBookSourceSync[4917]: 0x7faa506328a0: ManagedObjectContext (ABAddressBook) could not create the store at path: </Network/Servers/<path_to_user>/Library/Application Support/AddressBook/Sources/<a long uid>/AddressBook-v22.abcddb> - creation error: Error Domain=NSCocoaErrorDomain Code=134090 "A timeout error occurred while connecting to the persistent store." UserInfo=0x7faa5062eac0 {NSSQLiteErrorDomain=5, NSUnderlyingException=error during SQL execution : The database operation timed out after 44321.40 seconds.} {
    NSSQLiteErrorDomain = 5;
    NSUnderlyingException = "error during SQL execution : The database operation timed out after 44321.40 seconds.";
While the computer is in the condition I've described, I cannot start apps for most of the collaborative services (Mail, Reminders, Calendars, Addressbook, Messages).  I assume this is because they all rely upon a healthy AddressBook-v22.abcddb file.
2) All passwords in Internet Accounts (poorly named IMO) and Safari get wiped.  So far I haven't found any log entries useful to this.
3) Notes associated with my server-provided email account do not behave properly.  Again, this appears to be a local syncing issue as the Notes on the server remain and are available via my iPad.  However, on Mavericks when I start Notes it bounces and bounces and then will finally start with zero notes.  If I close it, and go into Internet Accounts, I have  to (re)check the box next to Notes, and then restart.  At that point, the app pulls down the current notes from the server.  With this third issue, it has been occuring ever since I upgraded to Mavericks and is a condition that exists even when the AddressBook database problem described above is not in place.
My first question then is, what might be causing these addressbook, password and Notes problems, and how do I fix the issue?
I've found if I delete the AddressBook folder from Application Support, I can set up a new Contacts account profile and get the contacts from the server.  Everything runs okay for a little bit, but then the problem starts up again.
My second question is whether or not the profile I had been pushing to log off users after 30 mins of inactivity could be a cause of the other issues?  Since I removed the package, I'll partially be able to test that myself.  The profile was only in place for a few days so the issues with the Notes pre-dates that.  Curious if others have thoughts about this.
Thank you.
Tim

Answer 1

Logged in this morning and having same basic issues so it does not appear that forced logoff profile was the culprit.
I'm walking through the log trying to track this down.  This seems to be the first significant error:
12/10/13 5:21:33.894 AM
com.apple.quicklook.satellite[3007]
CoreData: error: (3) access permission denied
12/10/13 5:21:34.235 AM
com.apple.quicklook.satellite[3007]
Unknown error reading database file, will attempt reimporting: Error Domain=NSCocoaErrorDomain Code=256 "The file couldn’t be opened." UserInfo=0x7fdb286129f0 {NSSQLiteErrorDomain=3, NSUnderlyingException=error during execution of SQL string 'pragma journal_mode=wal' : access permission denied} {
    NSSQLiteErrorDomain = 3;
    NSUnderlyingException = "error during execution of SQL string 'pragma journal_mode=wal' : access permission denied";
12/10/13 5:21:34.237 AM
com.apple.quicklook.satellite[3007]
Move Address Book store at /Network/Servers/<server-volume-path_to_user>/Library/Application Support/AddressBook/Sources/D5151080-51E2-4642-9C96-3947D4C49511/AddressBook-v22.abcddb to /Network/Servers/<server-volume-path_to_user>/Library/Application Support/AddressBook/Sources/D5151080-51E2-4642-9C96-3947D4C49511/AddressBook-v22.abcddb.FFB47C2D-950D-448F-B646-22F0BDE878EB.unknown
12/10/13 5:21:34.281 AM
com.apple.launchd.peruser.1025[167]
(com.apple.speech.synthesisserver) The following job tried to hijack the service "com.apple.speech.synthesis.SpeakingHotKeyPort" from this job: com.apple.speech.synthesis.SpeechSynthesisServer.31360
12/10/13 5:21:34.606 AM
com.apple.quicklook.satellite[3007]
Could not replace store at file:///Network/Servers/<server-volume-path_to_user>/Library/Application%20Support/AddressBook/Sources/D5151080-51E2-4642-9C96-3947D4C49511/AddressBook-v22.abcddb.FFB47C2D-950D-448F-B646-22F0BDE878EB.unknown from file:///Network/Servers/<server-volume-path_to_user>/Library/Application%20Support/AddressBook/Sources/D5151080-51E2-4642-9C96-3947D4C49511/AddressBook-v22.abcddb: Error Domain=NSSQLiteErrorDomain Code=3 "The operation couldn’t be completed. (NSSQLiteErrorDomain error 3.)" UserInfo=0x7fdb28500f80 {NSFilePath=/Network/Servers/<server-volume-path_to_user>/Library/Application Support/AddressBook/Sources/D5151080-51E2-4642-9C96-3947D4C49511/AddressBook-v22.abcddb.FFB47C2D-950D-448F-B646-22F0BDE878EB.unknown, reason=Failed to replace destination database} {
    NSFilePath = "/Network/Servers/<server-volume-path_to_user>/Library/Application Support/AddressBook/Sources/D5151080-51E2-4642-9C96-3947D4C49511/AddressBook-v22.abcddb.FFB47C2D-950D-448F-B646-22F0BDE878EB.unknown";
    reason = "Failed to replace destination database";
Indications seem to continue to point towards file permission issues but not sure where they are being generated.  All the files and directories in ~/Library/Application Support/Addressbook have a min of RW for the user.  I guess I will create a brand new test user on the server and set up dummy addressbook to check other file permissions. 
Still welcome other thoughts/suggestions from folks.
Tim
p.s., I thought Apple moved away from SQLite?
p.p.s. In my Addressbook folder, under sources, I seem to have three generated directories, each with different unique names.  Is this normal?