Apple mail can't save preferences

Using Apple Mail on my Macbook Pro running Lion 10.8.2. Also have Mail running on iPhone 4S and iPad 2. If I make any changes (Smart Folders, Signature file, etc.) and shut down the program, none of the changes are saved upon launching the program. I have several Mail accounts, all IMAP variety. I have repaired my disk and preferences using disk repair and Onyx. I have not made any changes to the iPhone or iPad applications.

Apple Support helped me solve this.
System Preferences>iCloud
Deselected "Documents & Data" and the ability to save new Smart Mailboxes has been restored.
Engineering is going to get this report and let me know what the next steps are. I was not using that iCloud feature to sync documents so deselection was not a problem.
Thanks, Apple Support.

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