Apple Mail, strange inbox messages deletion

I’m curious if anyone experienced something similar to this… We’re 10 people small business with all Macs. Apps we use are Apple Mail, iCal, MS Office 2008, Adobe Acrobat, and most other famous applications. For our email, we all use Apple Mail with IMAP. We used to use POP but we wanted to see same contents on Apple Mail, iPhone, and webmail, so we switched. One of the employees experienced strange problem yesterday, and I haven’t found exactly what caused that incident. She checked her email before she went to bed around 10pm, and there were about 200 messages in inbox. She did shut down her machine. Then, next morning, she turned on her mac and opened Apple Mail. There were no messages in her inbox. Over 200 messages got deleted or moved somewhere else. She found some in deleted folder, but still not everything. So, as I heard this issue, I checked on her web mail. Yes, I saw a bunch of messages in trash folder. So, I moved them all. I talked to our web host and made sure it wasn’t by them. And I’m the only one besides her who has her password. So, this seemed really strange, and I’m wondering what caused it. I’m curious if there is a software bug in Apple Mail. I do see some machines’ Apple Mail can’t quit, so the user must force quit. Has anyone experienced something similar? Thank you for reading my post. Appreciate your time.

Hi Ernie,
Thank you for your reply and explination.
1/ Yes, the instructions did help. It was obvious, but I haven't ever used Mac's. They are the best, but switching over it's not the easiest.
2/ Have been thinking about changing to another mail client because of this (Thunderbird). Usually everything with iOS X makes sense, but having the MAILBOXES option and sub-structure (Inbox, Flagged, Drafts, Sent, Junk, Trash) is beyond me at the moment (a lightbulb might go off in the future ...)
3/ Not sure why, but now everything is working fine. Could be becuase of the update to iOS 6.
Siki

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