Bayer Filter and colour balance.

Hi all.
I have recently been acquiring images using a mikrotron MC1363 camera and LV code 'Grab and save to AVI'. I have then used ImageJ to create a stack of U8 images. My problem then arises in that I need to apply a bayer filter and colour balance to the images. I have been sent a correction matrix by mikrotron and extracted pixel intensities from the U8 images, but am now stuck. I don't know how to use the information accrued to give a debayered image of true colour. Any advice would be great.
Attached is:
Tthe MC1363 manual
The matrices supplied by mikrotron (lupa1300)
An image folder containing:
-A true colour image
-A snap taken using the MC1365 of the true colour image
-Images of the colours red, green, blue, white and black extracted from the bottom right hand image, as u8 jpegs.
Thanks.
Dan.
Attachments:
992-EoSens 3CL-MC1364-65-Manual.pdf ‏795 KB

Hi Danbubbles,
The pixels of the Bayer filter are arranged in a checkerboard pattern on the sensor. There are twice as many green as red and blue pixels in order to mimic the higher sensitivity of the human eye towards green light.
Due to the filter each pixel measures only one color. The two remaining colors are estimated (interpolated) using the eight surrounding pixels. This technique is called Bayer demosaicing or Bayer to RGB Conversion.
http://www.stemmer-imaging.co.uk/en/glossary/5287-Bayer-Filter
As far as I'm concerned there exit different "de-bayering" algorithm, which are different in terms of quality and performance, but in general
0#
you "move" a structuring element - which is like a subset of your input-image - across your input-picture starting at row = 0 column = 0, which is indexing the same pixel in both of your input AND output-image: http://www.mathworks.de/help/images/morph6.gif
1#
then you calculate a new value for this particular pixel in your output-image via interpolating the indexed pixel and its adjacent pixels in the input-image, e.g. like described in this pdf: 
http://www.matrix-vision.com/tl_files/mv11/Glossary/art_bayermosaic_en.pdf
2#
then you move on to the next pixel which should be at row 0, column 1
repeat, until you reach the pixel at row n, column m
Regards,
Alex
♜♖ LabView 8.6 - LabView 2014 ♖♜

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