Best video asset format?

Help! I'm working out of FCP, original footage in 24pA, Sequences in ProRes 422 with Markers. When I export two Sequences as self-contained QT files and then import them into DVD Studio Pro, one of my videos looks like 4:3 (squeezed) and another looks like 16:9, but stretched horizontally too much. One comes in with the Chapter Markers and one doesn't. What's going on? And, if I start over, what's the best Sequence format and Export format out of fcp such that 24pA footage will arrive in good shape, with markers?
Thanks!

Not sure if this wold help, but I usually export the sequence from FC to compressor first, and make the mpeg files in compressor, then pull those assets into DVD Studio Pro.

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