Best way to manage large library with AAC and MP3 versions of files

I have a large library of music. I listen to music through iTunes and iPod/iPhones, but also other devices which only support MP3, and not AAC. I typically convert iTunes purchases to MP3, but I'm left with two copies of each song in the same folder. I'm looking for recommendations on the best way to manage what would essentially be a duplicated music library - a high quality version I use with my iTunes/ipods, and a lower quality MP3 version for the devices that only support that format.

I have had a similar problem. I have all my music residing on a NAS where I access it from iTunes (for managing my iPods/iPhones) and a Tivo PVR (which is connected to my house stereo system.) The problem is that Tivo does not recognize AAC. So I've used iTunes to create mp3 versions of all my purchased AAC music. Because the NAS is set as my iTunes media folder location, iTunes puts the mp3 copies back into the existing folder structure (which it keeps organised) on the NAS. Tivo accesses the NAS directly, over the network. But iTunes also puts the additional copy into the iTunes library which leaves me with multiple copies of the same songs on iTunes AND my iPods. Having multiple copies on the NAS (mp3 for Tivo and AAC for iPod) is OK: I've got plenty of space on the NAS and the Tivo doesn't 'see' the AAC files.
The solution I'm planning to implement is to delete the mp3 entries from the library as soon as I create them (leaving the files in the media folder.) But what I'm looking is for a way to automatically select the mp3 copies (for deletion) from the existing duplicates list. Any ideas?

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