Compressor encoded speed change clip with echo as motorboat sound

Took me two days to troubleshoot, through trial and error and process of elimination, why Compressor encoded an audio clip that had been speed changed and echo applied to it -- as rapid MOTORBOAT sound! Project is a 5.1 mix. Since STP3 won’t accept speed change clips, after I completed mix in STP I placed speed changed clips on FCP timeline below the exported STP 5.1 mix with the FCP audio tracks for that clip assigned to channels 1 & 2 for the fronts and channels 5 & 6 for the rears. The clip on 5 & 6 was duplicated and identical in every way to the clip on channels 1 & 2. Only the dupe clip on 5 & 6 did Compressor encode as motorboat. The identical clip on 1 & 2 encoded correctly. Both clips were set to play at same time since I wanted the effect to be on fronts and rears simultaneously. I could not get the motorboat sound to play back from either FCP timeline or Compressor preview window. Only after encode and burn to DVD did it show up. Why would Compressor introduce such artifacts on one of the clips and not both – if it’s going to do it at all – which it shouldn’t? Any ideas? I have other such effects throughout the project where I duped a speed changed clip with an effect applied to it and set it to play on fronts and rears simultaneously and Compressor encoded those correctly.

Well, it's a little late, but this is one of the reasons to have your startup drive cloned so you can restore it to a working state if an update, upgrade or install sends things south.
https://discussions.apple.com/docs/DOC-2494
Have you tried resetting your fcp preferences
https://discussions.apple.com/docs/DOC-2491
If this doesn't fix the problem, you could try sending the shot to motion.  You could aslo try changing the speed in the motion tab of the viewer.

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