Encore CS5 slideshow transitions not rendering reliably to DVD

I'm trying to create a relatively simple slideshow DVD in Encore CS5 on Mac (10.6).  The slideshow is about 35 images long, and most of the transitions are cross-dissolves.  However, there are exceptions: a couple of the transitions have no effect (ie, snap from one slide to the next).  All of the slides but one are manual advance.
The problem I'm having is that the cross-dissolve time (most are set to 3 seconds, vs. the default 2) seems to render as a variable length: hit the "next chapter" button on the DVD control, and the transition time might be the requested 3 seconds, but is occasionally zero seconds, or 1 second, or 2 seconds.  I haven't been able to find the rhyme or sense behind this, although I haven't devoted much time to studying it either.  The settings on each slide appear to be set correctly (ie, transition type set to "Cross-dissolve" and transition time set to 0:00:03:00) in the project.
An additional complication comes from the one autofollow slide in the show: it automatically advances as expected, but at the next manual transition, it cross-dissolves, appears to pop back to the image, then does the cross-dissolve again, finally ending up in the correct slide.
Due to project deadlines, I've given up trying to make this work in Encore and moved to a different product, but I'd appreciate any feedback on how to do this all correctly next time.

Many users have problems with Encore slideshows. The major advantage is the manual advance. I don't use them, so have little to offer.
The settings on each slide appear to be set correctly (ie, transition type set to "Cross-dissolve" and transition time set to 0:00:03:00) in the project.
I worry that your "set x:xx IN THE PROJECT" means that you have not checked each slide duration. It is possible to have a project setting, but for individual slides to have been set to something else.

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