EPS and Flattening

Hello,
I'm a longtime Freehand user trying to come up to speed on Illustrator's flattening feature.
Using Illustrator CS2 I've created an EPS file that will be imported into Multi-Ad Creator 'Professional' document for newspaper printing.
I've examined my EPS with Illustrator's 'Flattener Preview' palette for transparent objects and it hilighted a softdrop shadow and an PSD file that contains transparency.
Do I need to be concerned that these hilighted areas shown in the preview will not print?
If so, what can I do besides rasterizing them in Photoshop and re-importing then into Illustrator.
In the past, I had trouble with a similar project where someone used my Illustrator PDF in Quark 5.
I've been reading this site and still trying to catch on...
Thanks.
EB

Check what PDF the newspaper is able to accept. Our newspaper only accepts Acrobat version 4 which does not accept transparency. I have to rasterize or convert effects to rasterize before placing the images again or making PDFs. I don't know what version Quark5 accepts but from memory I think it's v4 without transparency too.
For newspaper and magazine standard settings (Australia) see this link: http://www.3dap.com.au/
PDF settings to download: http://www.3dap.com.au/3dapv2.htm

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