FAGLL03 report not filtering G/L line items based on vendor entered in free selection

Hello SAPians,
I have a requirement to add Vendor field in the free(dynamic) selection of the standard report FAGLL03 so that G/L line items are displayed(filtered) based on the vendor values given.
I followed the SAP note 945932 to create the vendor field by adding the ZZLIFNR in the custom include  of the table FLAGFLEXA followed by the configuration of custom fields in SPRO tcode. Post that I tested the report by giving one particular vendor number and came to know that no line items were displayed.
Upon debugging the program I came to know that , while selecting the data from the Inner join of BSIS and FLAGFLEXA tables, vendor number on FLAGFLEXA forms the part of WHERE clause and eventually no records are selected since all the existing records wont be having vendor number maintained in FLAGFLEXA table.
However I asked the functional guy to post the new line items under the assumption that it might update ZZLIFNR field in FLAGFLEXA. But our assumption turned out to be wrong. At this point I seek advice from your experience on the following points.
1) My understanding that failing of inner join condition is the root cause for data being not fetched in the output. Is it correct?
2) When we add new custom field in FLAGFLEXA(ZZLIFNR in my case), how the data needs to be populated for that particular field from       functional/technical perspective? Does the custom scenarios in SPRO are related to this in anyway?
3) How do we need to handle the old records existing in the system with respect to the updation of new field(column) added?
Any inputs in this regard is very much appreciated.
Thanks & Regards,
Yaseen

Hello Dennis,
thanks for the tip, your assumption is right, it's regarding 0FIGL_V40 in BI 7.0. Could you please be more detailed, which BW 3.x InfoSource do you mean? Or what exactly has to be done?
The "objects" under this InfoCube are - transformation, datasource (0FI_GL_40) and InfoPackage, that's it. When I check InfoCube Type/Namespace - it is based on Data Transfer Process for DirectAccess, but the checkbox With InfoSource 3.x is not checked..
Thank you in advance for your answer.
Regards,
Peter

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