H.264 Not Throwing Errors? Size Limit?

Hello,
I've been experiencing a very odd issue that I'm trying to narrow down. I've discovered the joys of H.264, and converted some smaller files (20-30 minute files) using this codec. (I used to use Sorensen 3).
Now I have a 2-hour video clip (without audio at this point) that I'm trying to transcode to H.264. The odd thing is, after approximately 24 hours of encoding (yes, it's a 2-hour clip, so I know it will take a while), the resultant file is empty.
By empty, I mean that it's either 0k, 4k, or 8k. All the while, QT Pro did not throw any errors to me.
I should have enough disk space for conversion, and have tried it on two different models (Mac Mini--I forget the speed, and G4 400MHz), both with the same result. I'm also using QT 7.0.3 and turned off sleep on both machines (including drive sleep).
Any ideas of what I might be missing? Two other factors that I different is that the shorter clips I would convert the size to 320x240, whereas the larger clip I'm keeping at 720x480, and the data rate I would clip on the smaller files to 500kb/s and the larger one at 1000kp/b and 1500 kb/s.
Thanks for any ideas!
Mac OS X (10.4.3)

What would those "several things" be that you've already tried?
It wouldn't hurt to know something about the project, your machine, and other things, either:
FAQ: What information should I provide when asking a question on this forum?

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