How to handle delta SPDD & SPAU adjustments in the 2nd Upgrade QA & PRD

Dear all,
We have successfully upgraded our development box and we have made the SPDD changes into a single transport requests and also the SPAU requests in a different requests.
Our ABAP team has made the SPDD adjustments comparing the objects with production and QA.
Now when we upgrade our QA box we have included the SPDD & SPAU transports and now we found that we have about 8 extra objects that needs to be modified manually in SPDD phase? out of 79 objects 71 is adjusted my out SPDD transports and it has left out 8 more objects.
These 8 objects were never shown in SPDD phase of our development box.
Can you please suggest us, like how to handle these delta objects, so that we won't phase the same issue when we move to production. (offcourse we will do 2-3 dry runs before going to production)
I have read the below note, but it is for the older version (without shadow instance)
Note 124522 - Importing a modification adjustment in 2nd upgrade
Thanks &
Regards
Senthil

1.If you have choosen strategy resource-minimized, they are adjusted during downtime before the ABAP Dictionary is activated.
copy the cofiles and datafiles in the respective directories. List all the requests in umodauto.lst.
In PREPARE phase ADJUSTPRP the following screen appears
For automatically maintaining your modification in your ystem during the upgrade transport request from earlier upgrades are searched in the umoauto.lst in directory /usr/sap/trans/bin..
The file could not be read
There are several reason why this may be correct
eg: 'this is your first upgrade' or 'your system is not modified'.
Did you expect a list of transports being found?
->Confirm a list of transports to be included in the upgrade
Select Yes & OK
Click on Yes to include the transport
Click Yes to stop the ACT_700 phase and check the results of SPDD
2.You can add additional requests to umodauto.lst
3. Regarding why its how in QA.? Reasons could be
1modification could have been done only in QA
2)Are the DEV and QA are on the same kernel & SP level's

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