I have generated two square wave forms using NI-9221. These two Square waveforms are suppose to be 90 degrees electrical from one another.

 I have two square wave forms from an encoder wheel. I can not seem to generate or calculate the phase of the waveforms. I have tried to extract the data but it is not accurate? I can not use a true false statement with the extracted data either. I have to have the one waveform 90 degrees electrical from the other waveform. Any Suggestions?

Fist thank you both for responding so quickly. I am using a half encoder wheel and the waveforms are certainly show the phases correctly.  The operator of this program will not have access to the graph only the data and measurements collected. The reason I am trying to get the phase is because that is going to be a major factor in if the board passes or fails. I extracted the phases from the waveforms but it’s not accurate at all. I think I may try to trigger when to measure the wave and when to stop measuring. Is that Possible?
J. Powell

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