Interaction of Time Machine and cloned backups.

I am not sure how TM works so perhaps someone can explain what is going on here. I use TM to back-up my internal disk plus external firewire and external USB drives. The TM drive is a dedicated 1TB Lacie Firewire. In addition I keep a clone of my start-up drive (CarbonCopyCloner - CCC) on a weekly basis.
Everything works swimingly but here's the question: I recently had to restore the start-up drive after a crash by restarting and restoring from the clone. That worked OK but then TM, on its next iteration, copied the whole drive (100GB) even though the vast majority of files were the same and unchanged. Is this normal behaviour? If so, I will be using up my TM filespace PDQ.

I found this http://forums.macrumors.com/showpost.php?p=4387985 which says:
"Well thank me later I got it working fellas. It was there in front of our faces with the exception of doing a chown and chmod.
Someone else please confirm I will post steps.
1) disconnect airport disk and plug into computer as a USB drive directly.
2) Set up time machine to use this volume.
3) In terminal cd to volume "cd /Volume/HDD"
4) In terminal "touch .com.apple.timemachine.supported" this will create an invisible file.
5) In terminal "sudo chown root:admin .com.apple.timemachine.supported"
6) In terminal "sudo chmod 1775 .com.apple.timemachine.supported"
7) In terminal "ls -l -a" the .com.apple.timemachine.supported file should be -rwxrwxr-t
8) eject disk, unplug from mac, plug into Airport.
9) mount at mac using connect to server in finder (command k) and afp://airportname.local./HDname
10) see if time machine now sees the drive and tries to use it."
Also, this http://forums.macrumors.com/showpost.php?p=4388264
" A simpler method....
I also got Time Machine working over AEBS but with a much simpler method.
1. Connect your USB disk directly to the Mac
2. Set up Time Machine and let your initial backup run
3. Eject the disk and connect to the AEBS
4. You need to 'touch' the disk by opening it in Finder, then Time Machine realises where it is and carries on.
Works for me on my iMac (wired) and Macbook (wireless to AEBS) - TM keeps the backups tidily with separate directories for each machine.
Still have an issue with my Macbook - it doesn't see the disks after sleeping.
Obviously Apple need to fix this - it shouldn't need me to view the disk each time so that TM can see it, and it should enable direct access to new disks via AEBS."

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    Begin forwarded message:
    From: Frances Topping <[email protected]>
    Subject: Re: - Old computer I had is OSX Snow Leopard with Entourage. New one is OSX Mavericks. Using Mail where are my addresses and old address book. Transferred old computer backup by Time Machine and other things work? Can't see a symbol for address book.
    Date: August 25, 2014 at 9:46:01 AM EDT
    To: discussions-replies <[email protected]>
    Old Entourage is POP and new Mavericks MAIL  is IMAP I believe. I don;t know how to export in the forms you mention. Frances

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    Hi Linc,
    I hope this helps you.
    Thanks,
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    4/21/15 2:30:48.894 PM com.apple.backupd[696]: Starting manual backup
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    4/21/15 2:48:21.586 PM WindowServer[155]: handle_will_sleep_auth_and_shield_windows: Deferring.
    4/21/15 2:48:21.706 PM imagent[281]: <IMMacNotificationCenterManager: 0x7fd518c317e0>: notification observer: com.apple.FaceTime   notification: __CFNotification 0x7fd518c34ab0 {name = _NSDoNotDisturbDisabledNotification}
    4/21/15 2:48:21.706 PM identityservicesd[285]: <IMMacNotificationCenterManager: 0x7f801a5487f0>: notification observer: com.apple.iChat   notification: __CFNotification 0x7f801a531dd0 {name = _NSDoNotDisturbDisabledNotification}
    4/21/15 2:48:21.750 PM identityservicesd[285]: <IMMacNotificationCenterManager: 0x7f801a5487f0>:    NC Disabled: NO
    4/21/15 2:48:21.750 PM imagent[281]: <IMMacNotificationCenterManager: 0x7fd518c317e0>:    NC Disabled: NO
    4/21/15 2:48:21.771 PM identityservicesd[285]: <IMMacNotificationCenterManager: 0x7f801a5487f0>:   DND Enabled: NO
    4/21/15 2:48:21.771 PM imagent[281]: <IMMacNotificationCenterManager: 0x7fd518c317e0>:   DND Enabled: NO
    4/21/15 2:48:21.771 PM imagent[281]: <IMMacNotificationCenterManager: 0x7fd518c317e0>: Updating enabled: YES   (Topics: (
        "com.apple.ess",
        "com.apple.private.ac"
    4/21/15 2:48:21.771 PM identityservicesd[285]: <IMMacNotificationCenterManager: 0x7f801a5487f0>: Updating enabled: YES   (Topics: (
        "com.apple.private.alloy.icloudpairing",
        "com.apple.private.alloy.continuity.encryption",
        "com.apple.private.alloy.continuity.activity",
        "com.apple.private.alloy.idstransfers",
        "com.apple.private.ids",
        "com.apple.private.alloy.phonecontinuity",
        "com.apple.ess",
        "com.apple.madrid",
        "com.apple.private.alloy.continuity.auth",
        "com.apple.private.ac",
        "com.apple.private.alloy.idsremoteurlconnection",
        "com.apple.private.alloy.sms",
        "com.apple.private.alloy.screensharing",
        "com.apple.private.alloy.maps",
        "com.apple.private.alloy.callhistorysync",
        "com.apple.private.alloy.continuity.tethering"
    4/21/15 2:48:21.772 PM identityservicesd[285]: <IMMacNotificationCenterManager: 0x7f801a722240>: notification observer: com.apple.iChat   notification: __CFNotification 0x7f801a41a7a0 {name = _NSDoNotDisturbDisabledNotification}
    4/21/15 2:48:21.782 PM identityservicesd[285]: <IMMacNotificationCenterManager: 0x7f801a722240>:    NC Disabled: NO
    4/21/15 2:48:21.788 PM identityservicesd[285]: <IMMacNotificationCenterManager: 0x7f801a722240>:   DND Enabled: NO
    4/21/15 2:48:21.789 PM identityservicesd[285]: <IMMacNotificationCenterManager: 0x7f801a722240>: Updating enabled: YES   (Topics: (
        "com.apple.madrid"
    4/21/15 2:48:26.347 PM com.apple.xpc.launchd[1]: (com.apple.auditd[1095]) Endpoint has been activated through legacy launch(3) APIs. Please switch to XPC or bootstrap_check_in(): com.apple.auditd
    4/21/15 2:48:26.357 PM david81968[1100]: audit warning: soft /var/audit
    4/21/15 2:48:26.357 PM david81968[1099]: audit warning: allsoft
    4/21/15 2:48:26.374 PM david81968[1102]: audit warning: closefile /var/audit/20150421184523.20150421184826

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