Issues with depreciating FLV and F4V video formats from Adobe Media Encoder 2004

Hi Adobe
There are a couple of issues that have come to light with the removal of FLV support from AME 2004. Please can you provide answers to the following:
How do we set up/create Flash Que Points in video, now that the FLV format has been removed for AME 2004? - This is something I use a lot for adding dynamic text to video in Flash projects.
How do we export video with Alpha, without the FLV format, which can then be used in Flash? - This typically is used to overlay presenter to camera (on green screen) on flash animations or interactions etc.
More info on these issue on the following video forums:
Re: How do I use Flash Que Markers without the ability to export to FLV or F4V in Premiere Pro CC 2014?
Re: FLV export gone.. need alpha channel in video for Flash

I know this already - what worries me is going forward, there is no alternative to using these features. Adobe has basically made the new versions of their software unusable to me and other users looking to use 'Flash Que Points' or 'Alpha in video'. What Adobe should do is provide a modern alternative, before ditching these formats. - Doesn't really make any sense!
The other big question is, for how long will they provide access to the older versions????

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