Using Adobe Media Encoder with After Effects and ExtendScript

Hi,
I'm trying to automate the process of encoding a video using the Adobe Media Encoder. The project I'm working on includes allowing a user to upload a video and having that video then be encoded in different formats. I'm very new to After Effects and ExtendScript, but the two ways I see of doing this are:
1) Use ExtendScript to fire the Adobe Media Encoder through After Effects, using the 'Add to Adobe Media Encoder Queue' function. I'm not sure if this is possible or not.
2) Bypass After Effects all together and use the 'watch folder' function in Adobe Media Encoder and upload the files directly to that folder.
I'd prefer to go route 1, if that's possible, but I'm not sure it is. I was thinking that I could write a script to work with Adobe Media Encoder to encode a given video, but from what I've read, ExtendScript isn't currently supported by Adobe Media Encoder? This is true? What would be the best way to go about accomplishing this?
Thanks.

I think you will have a much easier time just using option 2. I have to ask, why do you want the files to go through After Effects anyway? If you are just taking a file and converting it to ## different formats...the watch folder setup in AME would be super easy to setup.
All you need to do is ensure the user submitted files end up in a certain directory -- make that folder your watch folder and create a second folder within that one called 'encoded' or something along those lines. That way as long as AME is online and watch folders are active....you won't have to do a thing.

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