(JE 3.2.44) Couldn't open file

Hello!
We recently upgraded to newer version of BDB JE, and failed with random, but weird issue:
17/Oct/2007 04:49:38 ERROR [pool-97-thread-2] - com.sleepycat.je.DatabaseException: (JE 3.2.44) Database r
elations_database14269 id=26 rootLsn=0xffffffff/0xffffffff IN type=DBIN/2 id=29976291 not expected on INL
ist
com.sleepycat.je.DatabaseException: (JE 3.2.44) Database relations_database14269 id=26 rootLsn=0xffffffff/
0xffffffff IN type=DBIN/2 id=29976291 not expected on INList
        at com.sleepycat.je.evictor.Evictor.selectIN(Evictor.java:511)
        at com.sleepycat.je.evictor.Evictor.evictBatch(Evictor.java:354)
        at com.sleepycat.je.evictor.Evictor.doEvict(Evictor.java:249)
        at com.sleepycat.je.evictor.Evictor.doCriticalEviction(Evictor.java:274)
        at com.sleepycat.je.dbi.CursorImpl.close(CursorImpl.java:684)
        at com.sleepycat.je.Cursor.close(Cursor.java:262)
        at com.sleepycat.je.Cursor.close(Cursor.java:250)
        at com.sleepycat.je.Database.putInternal(Database.java:667)
        at com.sleepycat.je.Database.put(Database.java:609)
        at com.redwerk.webcrawler.storage.url.bdbje.BDBJEStorage.saveRelations(BDBJEStorage.java:361)
        at com.redwerk.webcrawler.storage.url.bdbje.BDBJEStorage.update(BDBJEStorage.java:396)
        at com.redwerk.webcrawler.storage.url.RetryHandlingStorageDecorator.update(RetryHandlingStorageDec
orator.java:159)
        at com.redwerk.webcrawler.storage.url.CountHandlingStorageDecorator.update(CountHandlingStorageDec
orator.java:86)
        at com.redwerk.webcrawler.filter.record.UrlProcessedFilter._accept(UrlProcessedFilter.java:34)
        at com.redwerk.webcrawler.filter.record.ChainedFilter.accept(ChainedFilter.java:23)
        at com.redwerk.webcrawler.filter.record.ChainedFilter.accept(ChainedFilter.java:25)
        at com.redwerk.webcrawler.Crawler.addRecord(Crawler.java:731)
        at com.redwerk.webcrawler.ConsumerThread.run(ConsumerThread.java:301)
        at edu.emory.mathcs.backport.java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:44
2)
        at edu.emory.mathcs.backport.java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:305)
        at edu.emory.mathcs.backport.java.util.concurrent.FutureTask.run(FutureTask.java:135)
        at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.
java:990)
        at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor
.java:531)
        at java.lang.Thread.run(Thread.java:595)
17/Oct/2007 04:49:38 ERROR [pool-97-thread-4] - com.sleepycat.je.DatabaseException: (JE 3.2.44) fetchTarge
t of 0x1d3/0x472b30 parent IN=32738188 lastFullVersion=0x1d3/0x479cdc parent.getDirty()=true state=2 com.s
leepycat.je.log.LogFileNotFoundException: (JE 3.2.44) 0x1d3/0x472b30 (JE 3.2.44) Couldn't open file db/000
001d3.jdb: db/000001d3.jdb (No such file or directory)
com.sleepycat.je.DatabaseException: (JE 3.2.44) fetchTarget of 0x1d3/0x472b30 parent IN=32738188 lastFullV
ersion=0x1d3/0x479cdc parent.getDirty()=true state=2 com.sleepycat.je.log.LogFileNotFoundException: (JE 3.
2.44) 0x1d3/0x472b30 (JE 3.2.44) Couldn't open file db/000001d3.jdb: db/000001d3.jdb (No such file or dire
ctory)
        at com.sleepycat.je.tree.ChildReference.fetchTarget(ChildReference.java:143)
        at com.sleepycat.je.tree.DIN.getDupCountLN(DIN.java:147)
        at com.sleepycat.je.dbi.CursorImpl.lockDupCountLN(CursorImpl.java:2409)
        at com.sleepycat.je.tree.Tree.insertDuplicate(Tree.java:2703)
        at com.sleepycat.je.tree.Tree.insert(Tree.java:2652)
        at com.sleepycat.je.dbi.CursorImpl.putLN(CursorImpl.java:1004)
        at com.sleepycat.je.dbi.CursorImpl.put(CursorImpl.java:1027)
        at com.sleepycat.je.Cursor.putAllowPhantoms(Cursor.java:871)
        at com.sleepycat.je.Cursor.putNoNotify(Cursor.java:808)
        at com.sleepycat.je.Cursor.putInternal(Cursor.java:762)
        at com.sleepycat.je.Database.putInternal(Database.java:663)
        at com.sleepycat.je.Database.put(Database.java:609)
        at com.redwerk.webcrawler.storage.url.bdbje.BDBJEStorage.saveRelations(BDBJEStorage.java:361)
        at com.redwerk.webcrawler.storage.url.bdbje.BDBJEStorage.update(BDBJEStorage.java:396)
        at com.redwerk.webcrawler.storage.url.RetryHandlingStorageDecorator.update(RetryHandlingStorageDec
orator.java:159)
        at com.redwerk.webcrawler.storage.url.CountHandlingStorageDecorator.update(CountHandlingStorageDec
orator.java:86)
        at com.redwerk.webcrawler.filter.record.UrlProcessedFilter._accept(UrlProcessedFilter.java:34)
        at com.redwerk.webcrawler.filter.record.ChainedFilter.accept(ChainedFilter.java:23)
        at com.redwerk.webcrawler.filter.record.ChainedFilter.accept(ChainedFilter.java:25)
        at com.redwerk.webcrawler.filter.record.ChainedFilter.accept(ChainedFilter.java:25)
        at com.redwerk.webcrawler.Crawler.addRecord(Crawler.java:731)
        at com.redwerk.webcrawler.ConsumerThread.run(ConsumerThread.java:301)
        at edu.emory.mathcs.backport.java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:44
2)
        at edu.emory.mathcs.backport.java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:305)
        at edu.emory.mathcs.backport.java.util.concurrent.FutureTask.run(FutureTask.java:135)
        at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.
java:990)
        at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor
.java:531)
        at java.lang.Thread.run(Thread.java:595)
Caused by: com.sleepycat.je.log.LogFileNotFoundException: (JE 3.2.44) 0x1d3/0x472b30 (JE 3.2.44) Couldn't
open file db/000001d3.jdb: db/000001d3.jdb (No such file or directory)
        at com.sleepycat.je.log.LogManager.getLogSource(LogManager.java:760)
        at com.sleepycat.je.log.LogManager.getLogEntry(LogManager.java:594)
        at com.sleepycat.je.log.LogManager.get(LogManager.java:735)
        at com.sleepycat.je.tree.ChildReference.fetchTarget(ChildReference.java:135)
        ... 27 moreWe checked our code and found we are not doing any removal of JE files at this stage (we had to implement removal of JE files BEFORE thread start to avoid cases when corrupted environment causes current task to not start, probably there's a better way? However this is definitely not a cause of the error, because removal is performed before environment is created)
The je.properties we're using is:
je.cleaner.threads=7
je.maxMemoryPercent=40
je.cleaner.deadlockRetry=7
#je.cleaner.minFileUtilization=20
je.cleaner.readSize=1048576
je.cleaner.lookAheadCacheSize=262144
#je.evictor.lruOnly=false
#je.evictor.nodesPerScan=100
je.log.faultReadSize=102400So the question is - is this is some bug in BDB JE, or we just missed things?

Hi Eugene,
We recently upgraded to newer version of BDB JE, and
failed with random, but weird issue:Were any of the log files for this environment created with an earlier version of JE? If so, what version?
Are you using DeferredWrite? There were bugs in earlier JE releases involving DeferredWrite and database removal/truncation and duplicates. I see from the information in your post that you are using database removal/truncation and duplicates.
We checked our code and found we are not doing any removal
of JE files at this stage (we had to implement
removal of JE files BEFORE thread start to avoid
cases when corrupted environment causes current task
to not start, probably there's a better way? However
this is definitely not a cause of the error, because
removal is performed before environment is created)I'm not sure I understand. Before opening an environment, if you wish to clear out all data in the environment directory and start from scratch, then the right thing to do is delete all the log files. If that's what you're doing, that's fine.
--mark

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