MBP has started freezing

usually with safari, but sometimes just using finder.
10.9.2, 250gb free hard drive space, 8gb ram
i have activity monitor open most of the time for continuous monitoring, but nothing obvious shows up in there, i mean the dock freezes, the monitoirng stops, you can still move the mouse around, but when i click on tabs in safari nothing happens. i wait for x time, maybe 20 seconds, or 2 mins, and then everything kicks back in, and all the tabs that ive clicked on in the pause time suddenly all get clicked at once!
something is obviously not right, but not really sure where to start looking!

Safari
1. Power cycle
     Power off the router. Unplug it from the wall. Wait a while.
     Plug it back to the wall. Power the router on. Wait until all the lights are lit properly.
     It will take a   while.
     Restart the computer.
     Start up in Safe Mode
     http://support.apple.com/kb/PH11212
2. Empty Caches
    Safari > Preference > Advanced
    Checkmark the box for "Show Develop menu in menu bar".
    Develop menu will appear in the Safari menu bar.
    Click Develop and select "Empty Caches" from the dropdown.
3. Reset Safari.
    Click Safari in the menu bar.
    From the drop down select "Reset Safari".
      Click "Reset".
4. Safari > Preferences > Privacy > Cookies and all other website data:
     Press “Remove All Website Data” button
5. Turn off Extensions if any, and launch Safari.
    Safari > Preferences > Extensions
6. Remove Anti-virus software, MacKeeper, CleanMyMac type applications if you have installed those.

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              0   CoreFoundation                      0x00007fff86cb641c __exceptionPreprocess + 172
              1   libobjc.A.dylib                     0x00007fff8fa24e75 objc_exception_throw + 43
              2   CoreFoundation                      0x00007fff86cb5fc9 -[NSException raise] + 9
              3   personalbackup                      0x00000001030298e6 personalbackup + 10470
              4   Foundation                          0x00007fff8c3f9094 __NSFireTimer + 96
              5   CoreFoundation                      0x00007fff86c1d724 __CFRUNLOOP_IS_CALLING_OUT_TO_A_TIMER_CALLBACK_FUNCTION__ + 20
              6   CoreFoundation                      0x00007fff86c1d25f __CFRunLoopDoTimer + 1151
              7   CoreFoundation                      0x00007fff86c8e76a __CFRunLoopDoTimers + 298
              8   CoreFoundation                      0x00007fff86bd8aa5 __CFRunLoopRun + 1525
              9   CoreFoundation                      0x00007fff86bd8275 CFRunLoopRunSpecific + 309
              10  HIToolbox                           0x00007fff8930ff0d RunCurrentEventLoopInMode + 226
              11  HIToolbox                           0x00007fff8930fcb7 ReceiveNextEventCommon + 479
              12  HIToolbox                           0x00007fff8930fabc _BlockUntilNextEventMatchingListInModeWithFilter + 65
              13  AppKit                              0x00007fff8799d28e _DPSNextEvent + 1434
              14  AppKit                              0x00007fff8799c8db -[NSApplication nextEventMatchingMask:untilDate:inMode:dequeue:] + 122
              15  AppKit                              0x00007fff879909cc -[NSApplication run] + 553
              16  AppKit                              0x00007fff8797b803 NSApplicationMain + 940
              17  IntegoMenu                          0x0000000100001aa8 start + 52
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        "X-Mme-Country" = AU;
        "X-Mme-Nac-Version" = 11A457;
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    (null)
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        "Accept-Language" = "en-au";
        "X-Mme-Client-Info" = "<MacBookPro5,1> <Mac OS X;10.9.1;13B42> <com.apple.AOSKit/176>";
        "X-Mme-Country" = AU;
        "X-Mme-Nac-Version" = 11A457;
        "X-Mme-Timezone" = AEDT;
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    (null)
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    (null),
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        DialogType = Unknown;
    }}, httpStatusCode=0, responseHeaders=
    (null),
    responseBody=
    (null)
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        calendar = "0x14000eb <x-coredata://46AC892B-FBE5-404E-98CB-56251B43F9AA/CalDAVSubscribedCalendar/p5> ";
        hasAlarmFilter = 0;
        hasAttachmentFilter = 0;
        hasTaskFilter = 0;
        isAutoProvisioned = 0;
        isAutoRefreshed = 0;
        languageCode = nil;
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        locationCode = nil;
        needsRefresh = 0;
        refreshDate = nil;
        refreshInterval = 0;
        subscriptionID = nil;
        subscriptionNotes = nil;
        subscriptionTitle = nil;
        subscriptionURL = "(...not nil..)";
        subscriptionURLString = "webcal://ical.me.com/alexyim/Holidays.ics";
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    21/12/2013 12:52:32.466 pm com.apple.backupd[562]: Attempting to mount network destination URL: afp://Christopher%20Molloy;[email protected]/Data
    21/12/2013 12:52:32.539 pm NetAuthSysAgent[570]: TUAMHandler::SetUAMType setting UAMType to 13
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        calendar = "0x14000eb <x-coredata://46AC892B-FBE5-404E-98CB-56251B43F9AA/CalDAVSubscribedCalendar/p5> ";
        hasAlarmFilter = 0;
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        isAutoProvisioned = 0;
        isAutoRefreshed = 0;
        languageCode = nil;
        lastError = "0x5700016b <x-coredata://46AC892B-FBE5-404E-98CB-56251B43F9AA/SubscriptionError/p348>";
        locationCode = nil;
        needsRefresh = 0;
        refreshDate = nil;
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        subscriptionID = nil;
        subscriptionNotes = nil;
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    21/12/2013 12:56:44.601 pm com.apple.backupd[562]: Backing up to /dev/disk2s2: /Volumes/Time Machine Backups/Backups.backupdb
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    21/12/2013 12:58:01.000 pm kernel[0]: disk0s2: I/O error.
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    21/12/2013 12:59:24.000 pm kernel[0]: disk0s2: I/O error.
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    21/12/2013 1:00:11.885 pm SystemUIServer[273]: Metadata.framework [Error]: mdsCopyStoreInformation failed: (268451843) (ipc/rcv) timed out
    21/12/2013 1:00:34.913 pm SystemUIServer[273]: Metadata.framework [Error]: mdsCopyStoreInformation failed: (268451843) (ipc/rcv) timed out
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    Try here:
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